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PI0020820 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020820
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr12:14690416..14690934
RNA-Seq ExpressionPI0020820
SyntenyPI0020820
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO73521.1 gag-pol polyprotein [Glycine max]2.5e-5763.79Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+GSNY YW+ RM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DAW+IL +THEGT+KVK+SRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
AAO73523.1 gag-pol polyprotein [Glycine max]1.0e-5563.79Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+GSNY YW+ RM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DA +IL  THEGT+KVKMSRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
AAO73527.1 gag-pol polyprotein [Glycine max]8.5e-5864.37Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+GSNY YW+ RM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DAW+IL +THEGT+KVKMSRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
AAO73529.1 gag-pol polyprotein [Glycine max]9.4e-5763.79Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+G+NY YW+ RM AFLKS+DSRTWKA+I GW HP   + EG     LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DAW+IL  THEGT+KVKMSRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
NP_001235160.1 gag-protease polyprotein [Glycine max]3.6e-5663.22Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+G+NY YW+ RM AFLKS+DSRTWKA+I  W HP   + EG   + LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DAW+IL  THEGT+KVKMSRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
TrEMBL top hitse value%identityAlignment
Q84VH6 Gag-pol polyprotein4.6e-5763.79Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+G+NY YW+ RM AFLKS+DSRTWKA+I GW HP   + EG     LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DAW+IL  THEGT+KVKMSRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
Q84VH8 Gag-pol polyprotein4.1e-5864.37Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+GSNY YW+ RM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DAW+IL +THEGT+KVKMSRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
Q84VI2 Gag-pol polyprotein5.0e-5663.79Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+GSNY YW+ RM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DA +IL  THEGT+KVKMSRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
Q84VI4 Gag-pol polyprotein1.2e-5763.79Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+GSNY YW+ RM AFLKS+DSRTWKA+I GW HP   + EG   + LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DAW+IL +THEGT+KVK+SRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
V9H042 Gag-protease polyprotein1.7e-5663.22Show/hide
Query:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN
        M   +EGG   RPPIL+G+NY YW+ RM AFLKS+DSRTWKA+I  W HP   + EG   + LKPE+DW   EDE ALGNS+ALNALFNGVD+N F+LIN
Subjt:  METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEG--VEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLIN

Query:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
        TCT A DAW+IL  THEGT+KVKMSRLQ+L++KFENLKM+E+E I ++H+ I +IAN   +L E++TDEK VRK
Subjt:  TCTFAADAWQILAVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTATTAGGGAAGGAGGTTCTACCACCAGACCACCTATTCTGAATGGATCAAACTATGCATATTGGCAAGTAAGAATGACTGCCTTCCTCAAATCAGTTGACAG
CAGAACCTGGAAAGCCATCATTGTAGGATGGACTCATCCAACGACCACTAATGATGAAGGAGTTGAAATTCTAAAACCAGAGAAAGACTGGAATGATGCTGAGGATGAAG
CTGCACTAGGAAATTCCCGAGCCTTGAATGCATTATTCAATGGTGTTGATCAAAACACTTTCAAACTCATCAACACTTGCACCTTTGCTGCTGATGCATGGCAAATTCTG
GCTGTGACTCATGAAGGAACTACAAAGGTCAAAATGTCTCGTCTTCAAATGTTATCTTCTAAATTTGAAAATCTTAAAATGCAGGAAGACGAAACCATTGCAGAATATCA
TGTGAAGATTCGCGACATTGCAAATGAATCGTTTTCCTTAGAAGAAAAATTAACTGATGAAAAATTCGTCCGAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACTATTAGGGAAGGAGGTTCTACCACCAGACCACCTATTCTGAATGGATCAAACTATGCATATTGGCAAGTAAGAATGACTGCCTTCCTCAAATCAGTTGACAG
CAGAACCTGGAAAGCCATCATTGTAGGATGGACTCATCCAACGACCACTAATGATGAAGGAGTTGAAATTCTAAAACCAGAGAAAGACTGGAATGATGCTGAGGATGAAG
CTGCACTAGGAAATTCCCGAGCCTTGAATGCATTATTCAATGGTGTTGATCAAAACACTTTCAAACTCATCAACACTTGCACCTTTGCTGCTGATGCATGGCAAATTCTG
GCTGTGACTCATGAAGGAACTACAAAGGTCAAAATGTCTCGTCTTCAAATGTTATCTTCTAAATTTGAAAATCTTAAAATGCAGGAAGACGAAACCATTGCAGAATATCA
TGTGAAGATTCGCGACATTGCAAATGAATCGTTTTCCTTAGAAGAAAAATTAACTGATGAAAAATTCGTCCGAAAGTGA
Protein sequenceShow/hide protein sequence
METIREGGSTTRPPILNGSNYAYWQVRMTAFLKSVDSRTWKAIIVGWTHPTTTNDEGVEILKPEKDWNDAEDEAALGNSRALNALFNGVDQNTFKLINTCTFAADAWQIL
AVTHEGTTKVKMSRLQMLSSKFENLKMQEDETIAEYHVKIRDIANESFSLEEKLTDEKFVRK