; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0020821 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020821
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:20387685..20388428
RNA-Seq ExpressionPI0020821
SyntenyPI0020821
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031841.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-3947.78Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDDPCYVFGKD---
        M++S+RAP+H+WTKEEE  +VE L+ELVS  GWKSDN                   KCIIAE+ELFDNWV+SHPAAKGLLNKPF YY++  YVFG++   
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDDPCYVFGKD---

Query:  --LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKNAMDFANDQLKG
                   S+  GG        +G+ DFP +           G+D+S DD+  SRP R  EGRTGSSGSKRK+G Q    VE I  A+D  N+QL+ 
Subjt:  --LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKNAMDFANDQLKG

Query:  IVE
        I E
Subjt:  IVE

KAA0055631.1 retrotransposon protein [Cucumis melo var. makuwa]9.9e-3845.16Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD
        M++S+RAP+H+WTKEEE  LVE L++LVS  GWKSDN                              KCIIAE+ELFDNWV+SHPAAK LLNKPF YYD+
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD

Query:  PCYVFGKDLRRELVQRHSST---------SGGM----CIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEI
          YVFG+D    +  R + T         SGG       +G+ DFPL+           G+D+S DD+  SRP R+ EGRTGSSGSKRK+G Q    +E 
Subjt:  PCYVFGKDLRRELVQRHSST---------SGGM----CIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEI

Query:  IKNAMDFANDQLKGIVE
        I   +D  N+QL+ I +
Subjt:  IKNAMDFANDQLKGIVE

KAA0065821.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-3845.33Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD
        M++S+RAP+H+WTKEEE  LVE L+ELVS  GWKSDN                              KCI+AE+ELFDNWV+SHP AKGLLNKPF YYD+
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD

Query:  PCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKN
          YVFG+D              S+  GG        +G++DFP +           G+D+S DD+  SRP R+ EGRTGSSGSKRK+G Q    +E I  
Subjt:  PCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKN

Query:  AMDFANDQLKGIVE
        A+D  N+QL+ I E
Subjt:  AMDFANDQLKGIVE

KAA0067987.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-3744.04Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN---------------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFL
        M++S+ AP+H+WTKE EW LVE L+ELVS  GWKSDN                                  KCIIAE++LFDNWV+SHPAAKGL+NKPF 
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN---------------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFL

Query:  YYDDPCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVE
        YYD+  YVFG+D              S+  GG        +G++DFP        S+   G+D+S DD+  SRP R+ EGRT SSGSKRK+G Q    +E
Subjt:  YYDDPCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVE

Query:  IIKNAMDFANDQLKGIVE
         I  A+D  N+QL+ I E
Subjt:  IIKNAMDFANDQLKGIVE

TYJ96560.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-3845.33Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD
        M++S+RAP+H+WTKEEE  LVE L+ELVS  GWKSDN                              KCI+AE+ELFDNWV+SHP AKGLLNKPF YYD+
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD

Query:  PCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKN
          YVFG+D              S+  GG        +G++DFP +           G+D+S DD+  SRP R+ EGRTGSSGSKRK+G Q    +E I  
Subjt:  PCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKN

Query:  AMDFANDQLKGIVE
        A+D  N+QL+ I E
Subjt:  AMDFANDQLKGIVE

TrEMBL top hitse value%identityAlignment
A0A5A7SQL1 Retrotransposon protein2.6e-3947.78Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDDPCYVFGKD---
        M++S+RAP+H+WTKEEE  +VE L+ELVS  GWKSDN                   KCIIAE+ELFDNWV+SHPAAKGLLNKPF YY++  YVFG++   
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDDPCYVFGKD---

Query:  --LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKNAMDFANDQLKG
                   S+  GG        +G+ DFP +           G+D+S DD+  SRP R  EGRTGSSGSKRK+G Q    VE I  A+D  N+QL+ 
Subjt:  --LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKNAMDFANDQLKG

Query:  IVE
        I E
Subjt:  IVE

A0A5A7UQ11 Retrotransposon protein4.8e-3845.16Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD
        M++S+RAP+H+WTKEEE  LVE L++LVS  GWKSDN                              KCIIAE+ELFDNWV+SHPAAK LLNKPF YYD+
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD

Query:  PCYVFGKDLRRELVQRHSST---------SGGM----CIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEI
          YVFG+D    +  R + T         SGG       +G+ DFPL+           G+D+S DD+  SRP R+ EGRTGSSGSKRK+G Q    +E 
Subjt:  PCYVFGKDLRRELVQRHSST---------SGGM----CIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEI

Query:  IKNAMDFANDQLKGIVE
        I   +D  N+QL+ I +
Subjt:  IKNAMDFANDQLKGIVE

A0A5A7VJG4 Retrotransposon protein5.7e-3945.33Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD
        M++S+RAP+H+WTKEEE  LVE L+ELVS  GWKSDN                              KCI+AE+ELFDNWV+SHP AKGLLNKPF YYD+
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD

Query:  PCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKN
          YVFG+D              S+  GG        +G++DFP +           G+D+S DD+  SRP R+ EGRTGSSGSKRK+G Q    +E I  
Subjt:  PCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKN

Query:  AMDFANDQLKGIVE
        A+D  N+QL+ I E
Subjt:  AMDFANDQLKGIVE

A0A5A7VL88 Retrotransposon protein1.4e-3744.04Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN---------------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFL
        M++S+ AP+H+WTKE EW LVE L+ELVS  GWKSDN                                  KCIIAE++LFDNWV+SHPAAKGL+NKPF 
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN---------------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFL

Query:  YYDDPCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVE
        YYD+  YVFG+D              S+  GG        +G++DFP        S+   G+D+S DD+  SRP R+ EGRT SSGSKRK+G Q    +E
Subjt:  YYDDPCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVE

Query:  IIKNAMDFANDQLKGIVE
         I  A+D  N+QL+ I E
Subjt:  IIKNAMDFANDQLKGIVE

A0A5D3B9L6 Retrotransposon protein9.7e-3945.33Show/hide
Query:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD
        M++S+RAP+H+WTKEEE  LVE L+ELVS  GWKSDN                              KCI+AE+ELFDNWV+SHP AKGLLNKPF YYD+
Subjt:  MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDN-----------------------------VKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDD

Query:  PCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKN
          YVFG+D              S+  GG        +G++DFP +           G+D+S DD+  SRP R+ EGRTGSSGSKRK+G Q    +E I  
Subjt:  PCYVFGKD-----LRRELVQRHSSTSGG-----MCIEGSRDFPLIMETIQRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKN

Query:  AMDFANDQLKGIVE
        A+D  N+QL+ I E
Subjt:  AMDFANDQLKGIVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCCTCCCGGGCCCCCAAACACATCTGGACGAAGGAAGAAGAGTGGTACCTGGTCGAGGCCTTGGTGGAGTTGGTATCCGCCAGCGGTTGGAAGTCAGACAA
TGTGAAGTGCATCATAGCTGAAAGAGAGTTGTTTGACAATTGGGTTAAGAGTCATCCTGCTGCGAAGGGCCTCCTAAACAAGCCATTTCTCTATTATGATGACCCGTGCT
ACGTATTTGGGAAGGATCTGCGACGAGAGCTCGTGCAGAGACATTCGTCGACATCGGGTGGAATGTGCATAGAGGGTTCGAGGGATTTCCCGCTGATTATGGAAACGATA
CAGAGATCCCTATGTTGTACAGGACTAGACATGTCGCCTGATGACATCGCGGGCTCACGCCCCGGTCGCTCGATGGAGGGTAGGACTGGTTCAAGCGGATCAAAGAGGAA
GCAAGGAGGCCAGGCAACACAGACTGTGGAGATCATTAAGAATGCAATGGACTTCGCCAACGACCAGTTGAAGGGCATTGTAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCCTCCCGGGCCCCCAAACACATCTGGACGAAGGAAGAAGAGTGGTACCTGGTCGAGGCCTTGGTGGAGTTGGTATCCGCCAGCGGTTGGAAGTCAGACAA
TGTGAAGTGCATCATAGCTGAAAGAGAGTTGTTTGACAATTGGGTTAAGAGTCATCCTGCTGCGAAGGGCCTCCTAAACAAGCCATTTCTCTATTATGATGACCCGTGCT
ACGTATTTGGGAAGGATCTGCGACGAGAGCTCGTGCAGAGACATTCGTCGACATCGGGTGGAATGTGCATAGAGGGTTCGAGGGATTTCCCGCTGATTATGGAAACGATA
CAGAGATCCCTATGTTGTACAGGACTAGACATGTCGCCTGATGACATCGCGGGCTCACGCCCCGGTCGCTCGATGGAGGGTAGGACTGGTTCAAGCGGATCAAAGAGGAA
GCAAGGAGGCCAGGCAACACAGACTGTGGAGATCATTAAGAATGCAATGGACTTCGCCAACGACCAGTTGAAGGGCATTGTAGAGTGA
Protein sequenceShow/hide protein sequence
MASSSRAPKHIWTKEEEWYLVEALVELVSASGWKSDNVKCIIAERELFDNWVKSHPAAKGLLNKPFLYYDDPCYVFGKDLRRELVQRHSSTSGGMCIEGSRDFPLIMETI
QRSLCCTGLDMSPDDIAGSRPGRSMEGRTGSSGSKRKQGGQATQTVEIIKNAMDFANDQLKGIVE