; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0020832 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020832
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionglycine-rich RNA-binding protein 4, mitochondrial
Genome locationchr08:16253954..16256094
RNA-Seq ExpressionPI0020832
SyntenyPI0020832
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008447620.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]1.0e-6291.55Show/hide
Query:  MAFFSTVRRVLSGSS-SPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEM
        MAFFSTVRRVLSGSS S SSSILRSQWNAVRLSSTLTSPKLFISGLSRLTT+EKL+EAFSSFGQLV+A+VVTDRATGRSKGF FVTY TIEEAE+AR+EM
Subjt:  MAFFSTVRRVLSGSS-SPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEM

Query:  NAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG
        NAKFLDGWVIFVDPAKPREPRPP  PQSETSEFGIRTNKTIG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG

XP_022143719.1 organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]4.6e-6087.32Show/hide
Query:  MAFFSTVRRVLSG-SSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEM
        MAF S+VRRVL+G SSS +SSIL+SQW  +RLSSTLTSPKLFISGLSRLTT+EKLQEAFSSFGQLVEA+V+TDRATGRSKGFGFVTY TIE+AEKARE M
Subjt:  MAFFSTVRRVLSG-SSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEM

Query:  NAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG
        NAKFLDGWVIFVDPAKPREPRPP  PQSETSEFGIRTNKTIG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG

XP_022972736.1 organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]2.3e-5987.5Show/hide
Query:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN
        MAFFSTVRRVL+GSSS SSS+LRSQW + RLSSTLTSPKLFISGLSRLTT+EKLQEAF+SFGQLVEA+V+TDRATGRSKGFGFVTY TIEEAEKARE MN
Subjt:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAKPREPRPPQHPQ---SETSEFGIRTNKTIG
        AKFLDGWVIFVDPAKPREPRPP  PQ   +ETSEFGIRTNKTIG
Subjt:  AKFLDGWVIFVDPAKPREPRPPQHPQ---SETSEFGIRTNKTIG

XP_031739912.1 organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus]1.3e-6290.91Show/hide
Query:  MAFFSTVRRVLSG--SSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREE
        MAFFSTVRRVL+G  SSS SSSILRSQWNAVRLSSTLTSPKLFISGLSRLTT+EKL+EAFSSFGQLV+A+VVTDRATGRSKGF FVTY TI+EAEKAREE
Subjt:  MAFFSTVRRVLSG--SSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREE

Query:  MNAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG
        MNAKFLDGWVIFVDPAKPREPRPP  PQSETSEFGIRTNKTIG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG

XP_038881167.1 organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]1.4e-5988.19Show/hide
Query:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN
        MAFFSTVRRVL+GSS  SSSILRSQW AVRLSSTLTSP+LFISGLSRLTT+EKLQEAFSSFGQLVEA+V+TDR TGRSKGFGFV+Y TIEEAEKAREEMN
Subjt:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAK---PREPRPPQHPQSETSEFGIRTNKTIG
        AKFLDGWVIFVDPAK   PREPRPP  PQ ETSEFGIRTNKTIG
Subjt:  AKFLDGWVIFVDPAK---PREPRPPQHPQSETSEFGIRTNKTIG

TrEMBL top hitse value%identityAlignment
A0A1S3BHV3 glycine-rich RNA-binding protein 4, mitochondrial4.8e-6391.55Show/hide
Query:  MAFFSTVRRVLSGSS-SPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEM
        MAFFSTVRRVLSGSS S SSSILRSQWNAVRLSSTLTSPKLFISGLSRLTT+EKL+EAFSSFGQLV+A+VVTDRATGRSKGF FVTY TIEEAE+AR+EM
Subjt:  MAFFSTVRRVLSGSS-SPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEM

Query:  NAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG
        NAKFLDGWVIFVDPAKPREPRPP  PQSETSEFGIRTNKTIG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG

A0A6J1CQ59 organelle RRM domain-containing protein 2, mitochondrial2.2e-6087.32Show/hide
Query:  MAFFSTVRRVLSG-SSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEM
        MAF S+VRRVL+G SSS +SSIL+SQW  +RLSSTLTSPKLFISGLSRLTT+EKLQEAFSSFGQLVEA+V+TDRATGRSKGFGFVTY TIE+AEKARE M
Subjt:  MAFFSTVRRVLSG-SSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEM

Query:  NAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG
        NAKFLDGWVIFVDPAKPREPRPP  PQSETSEFGIRTNKTIG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG

A0A6J1HDN1 organelle RRM domain-containing protein 2, mitochondrial5.5e-5988.81Show/hide
Query:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN
        MAFFSTVRRVL+GSSS SSS+LRSQW   RLSSTLTSPKLFISGLSRLTT+EKLQEAF+SFGQLVEA+V+TDRATGRSKGFGFVTY TIEEAEKARE MN
Subjt:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAKPREPR-PPQHPQS-ETSEFGIRTNKTIG
        AKFLDGWVIFVDPAKPREPR PP  PQS ETSEFGIRTNKTIG
Subjt:  AKFLDGWVIFVDPAKPREPR-PPQHPQS-ETSEFGIRTNKTIG

A0A6J1I6S8 organelle RRM domain-containing protein 2, mitochondrial1.1e-5987.5Show/hide
Query:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN
        MAFFSTVRRVL+GSSS SSS+LRSQW + RLSSTLTSPKLFISGLSRLTT+EKLQEAF+SFGQLVEA+V+TDRATGRSKGFGFVTY TIEEAEKARE MN
Subjt:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAKPREPRPPQHPQ---SETSEFGIRTNKTIG
        AKFLDGWVIFVDPAKPREPRPP  PQ   +ETSEFGIRTNKTIG
Subjt:  AKFLDGWVIFVDPAKPREPRPPQHPQ---SETSEFGIRTNKTIG

A0A7N2LNA5 RRM domain-containing protein1.2e-5376.6Show/hide
Query:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN
        MAF S +RRVL G SS +SSIL+S + ++R ++TLTSPKLFISGLSRLTT++KLQEAFS FGQLV+A+V+TDRATGRSKGFGFV+Y TIEEAEKARE MN
Subjt:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG
        AKFLDGWVIFVDPAKPREPRPP  PQ E SE G RTN+T+G
Subjt:  AKFLDGWVIFVDPAKPREPRPPQHPQSETSEFGIRTNKTIG

SwissProt top hitse value%identityAlignment
Q8L440 Organelle RRM domain-containing protein 1, chloroplastic8.1e-1545.35Show/hide
Query:  SSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        S  + + KLFI+GLS  T+ + L+ AF  FG+LVE +++ D+ + RSKG+ F+ Y T E A  A +EMN K ++GW+I VD AK +
Subjt:  SSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Q99070 Glycine-rich RNA-binding protein 21.4e-1448.1Show/hide
Query:  KLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        + F+ GL+  T NE L++AF++FGQ+++++V+TDR TGRS+GFGFVT+ + +    A E MN K LDG  I V+ A+ R
Subjt:  KLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Q9FFZ6 Small RNA-binding protein 11, chloroplastic5.1e-1756.25Show/hide
Query:  KLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPRE
        KLFI GLS  TT + L EAFS  GQ+VEA++V DR + RSKGFGFVT+ + +EA+KA  E N + L+G  IFVD AK ++
Subjt:  KLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPRE

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial5.2e-2253.19Show/hide
Query:  SPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPQHPQSETS
        S  LF+SGLS+ TT+E L+ AF+ FG++ +A+VVTDR +G SKGFGFV Y T+E++ K    M+ KFLDGWVIF + A+PRE      PQ+  S
Subjt:  SPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPQHPQSETS

Q9FZ84 Glycine-rich RNA-binding protein 6, mitochondrial3.6e-1554.32Show/hide
Query:  TLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPA
        +LT  K+F+ GLS  T  E L+EAF SFG++V+A VV DR +G S+GFGFVTY +IE A  A + M  K LDG +I V PA
Subjt:  TLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPA

Arabidopsis top hitse value%identityAlignment
AT1G18630.1 glycine-rich RNA-binding protein 62.6e-1654.32Show/hide
Query:  TLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPA
        +LT  K+F+ GLS  T  E L+EAF SFG++V+A VV DR +G S+GFGFVTY +IE A  A + M  K LDG +I V PA
Subjt:  TLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPA

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-4870.63Show/hide
Query:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN
        MAF S+ RR+++G    SSS+L S    VR  STLTSP+LF+SGLSRLTTNEKLQ+AF+SFGQLV+ARV+TDR +GRSKGFGFVTY TIE+AEKA+ EMN
Subjt:  MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMN

Query:  AKFLDGWVIFVDPAKPREPRPP--QHPQSETSEFGIRTNKTIG
        AKFLDGWVIFVDPA+PREPR P  Q P   +SE G  TNKTIG
Subjt:  AKFLDGWVIFVDPAKPREPRPP--QHPQSETSEFGIRTNKTIG

AT3G20930.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.7e-1645.35Show/hide
Query:  SSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        S  + + KLFI+GLS  T+ + L+ AF  FG+LVE +++ D+ + RSKG+ F+ Y T E A  A +EMN K ++GW+I VD AK +
Subjt:  SSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPR

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein3.6e-1856.25Show/hide
Query:  KLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPRE
        KLFI GLS  TT + L EAFS  GQ+VEA++V DR + RSKGFGFVT+ + +EA+KA  E N + L+G  IFVD AK ++
Subjt:  KLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPRE

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.7e-2353.19Show/hide
Query:  SPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPQHPQSETS
        S  LF+SGLS+ TT+E L+ AF+ FG++ +A+VVTDR +G SKGFGFV Y T+E++ K    M+ KFLDGWVIF + A+PRE      PQ+  S
Subjt:  SPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPQHPQSETS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAGTGGTTCTTCTTCTCCTTCCTCCTCCATTCTCCGATCCCAGTGGAACGCCGTTCGTCTCAGCTCAACTCTCACATC
CCCTAAGCTCTTCATCAGTGGTCTTTCGAGATTAACAACAAATGAGAAGCTCCAAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGAAGCAAGGGTTGTAACCGATAGGG
CGACGGGAAGATCGAAGGGATTTGGCTTCGTAACCTACTGTACAATAGAAGAGGCTGAGAAAGCTAGAGAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTT
GTTGATCCTGCCAAACCCAGGGAGCCTAGACCTCCTCAACACCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTGGTGTGGATGATTGCTT
GCAGAATTTTTGA
mRNA sequenceShow/hide mRNA sequence
AAGGGCAACGGACGGTTGTATAACCAAAACCCAAACCCGAAACCCTAAAAATCTTTCCGTCGCAGCGGGCTCTTCTTTTTCATCGGCCGATCGAAACCTTATGGCTTTCT
TCTCCACCGTAAGGCGCGTTCTTAGTGGTTCTTCTTCTCCTTCCTCCTCCATTCTCCGATCCCAGTGGAACGCCGTTCGTCTCAGCTCAACTCTCACATCCCCTAAGCTC
TTCATCAGTGGTCTTTCGAGATTAACAACAAATGAGAAGCTCCAAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGAAGCAAGGGTTGTAACCGATAGGGCGACGGGAAG
ATCGAAGGGATTTGGCTTCGTAACCTACTGTACAATAGAAGAGGCTGAGAAAGCTAGAGAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTTGTTGATCCTG
CCAAACCCAGGGAGCCTAGACCTCCTCAACACCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTGGTGTGGATGATTGCTTGCAGAATTTT
TGAAATCTCTTAGCATTTGCTCATTTTTTCCAATTGCATATGGTTGAGTCTGATGTATGTCTTCATCCATGGGTACTATAGATAAAATTCATGAATAGCACTCTCAAGGT
GGCCTTAAAACTGCCAGAAATTGGGCATTATTTTGTTATAGGTATGGATTTGTATTCAGAAAAGTATTTAGTGACCTTAGGTTTATTATCCATATTTTATATGTATTTTG
TTTTAGTTTTTTATATTTAATAATTATTCTATTTTGATATCTAA
Protein sequenceShow/hide protein sequence
MAFFSTVRRVLSGSSSPSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTNEKLQEAFSSFGQLVEARVVTDRATGRSKGFGFVTYCTIEEAEKAREEMNAKFLDGWVIF
VDPAKPREPRPPQHPQSETSEFGIRTNKTIGGVDDCLQNF