CuGenDBv2

Gene ID	PI0020856
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr10:8445787..8447096
RNA-Seq Expression	PI0020856
Synteny	PI0020856
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.0e-41

70.4

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        MEK+++ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP+KP                       VHE +AED +YIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQFDAFD+AK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

KAA0047794.1 putative mitochondrial protein [Cucumis melo var. makuwa]

2.5e-48

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        MEK+ +ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP+KPT   KN   + TE+ D  +S++ VHEPT ED +YIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQFD FD+AK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]

1.0e-41

70.4

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        MEK+++ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP+KP                       VHE +AED +YIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQFDAFD+AK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

XP_016901896.1 PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo]

2.0e-45

76.8

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        M+K+N+AR ISTILDG+NYITWAH MRSFLIGRKLWRIVTGDITKPIKPT+  KNI  D T N    +S+V +HE TAED KYIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQ D+FDTAK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]

1.1e-48

79.2

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        MEK  +ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP+KPT L     +D TEN+D   S+VTV E TAE  KYIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQFDAFDTAK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BBA1 uncharacterized protein LOC103488200

5.0e-42

70.4

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        MEK+++ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP+KP                       VHE +AED +YIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQFDAFD+AK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

A0A1S4E0Y9 uncharacterized protein LOC107991463

9.7e-46

76.8

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        M+K+N+AR ISTILDG+NYITWAH MRSFLIGRKLWRIVTGDITKPIKPT+  KNI  D T N    +S+V +HE TAED KYIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQ D+FDTAK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-42

70.4

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        MEK+++ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP+KP                       VHE +AED +YIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQFDAFD+AK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

A0A5A7TXR0 Putative mitochondrial protein

1.2e-48

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        MEK+ +ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP+KPT   KN   + TE+ D  +S++ VHEPT ED +YIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQFD FD+AK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.0e-42

70.4

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Query:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW
        MEK+++ARPISTILDG+NYITWAHQMRSFLIGRKLWRIVTGDITKP+KP                       VHE +AED +YIERLEDWDSKNHQIITW
Subjt:  MEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQIITW

Query:  LGNTSIPAIHTQFDAFDTAKDFGIF
        LGNTSIPAIHTQFDAFD+AK+   F
Subjt:  LGNTSIPAIHTQFDAFDTAKDFGIF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTGTTGCGAGACGAAATGGGTATCTGAGAAGGAAGTGAGAGCGTTCTGCAAGCTAGTGGTGAGCTACGCGAGATCCACCGCCGCCGAATATTCACTGTTCAGATCCGA
CGCACAAACCCACGATCAGATCCGAATCAGTCGAGTTTTCTTGGCTCCCCGTTCAAGATCCAGTTCCGATCCAGTCTGTTCTCCTCGCTCTGCAGTCGCGACTCCCACAC
CCATTCACTCTATGCTCCTTCGGTCTGTAAACACCAGCAAACCAATCTCACCGGATTTACTTCAGATCTGCTTCTACGCATCTACCTTTGTGTTATTCGCATTCCTGCCT
CCTCCACTTTGCGGCTCTTCGTGCAAGCTGATCAGATCGATGGAGAAAAGTAATATTGCCCGTCCCATTAGCACTATTCTGGATGGATCAAATTATATCACCTGGGCCCA
CCAAATGAGGAGTTTCTTGATTGGTCGAAAACTATGGCGCATAGTCACTGGCGATATCACCAAACCCATTAAACCCACTTCTCTCAGGAAAAACATAAGGCTAGACATCA
CTGAAAATGTCGATCCCGCCTCCTCTGAAGTCACTGTTCATGAGCCTACCGCAGAAGATGCCAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCATCAAATC
ATCACTTGGTTGGGTAACACTTCTATTCCAGCTATACATACTCAATTTGATGCTTTCGATACCGCTAAAGATTTTGGGATTTTCTGTCCACACGTTTTCAGTCTATTGGT
CTTGCTCACCATTACCAATTACACTCTCGACTCGTTAGTTTAA

mRNA sequence

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Protein sequence

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MCCETKWVSEKEVRAFCKLVVSYARSTAAEYSLFRSDAQTHDQIRISRVFLAPRSRSSSDPVCSPRSAVATPTPIHSMLLRSVNTSKPISPDLLQICFYASTFVLFAFLP
PPLCGSSCKLIRSMEKSNIARPISTILDGSNYITWAHQMRSFLIGRKLWRIVTGDITKPIKPTSLRKNIRLDITENVDPASSEVTVHEPTAEDAKYIERLEDWDSKNHQI
ITWLGNTSIPAIHTQFDAFDTAKDFGIFCPHVFSLLVLLTITNYTLDSLV

PI0020856 (gene) of Melon (PI 482460) v1 genome