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PI0020879 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020879
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr03:20002044..20005013
RNA-Seq ExpressionPI0020879
SyntenyPI0020879
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-3673.87Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        ME+CPP P +NASQ+V+DAYD  TK N+KA++YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN  MKEDQSVREHVLDM+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNEVVME
        N+AE N VV +
Subjt:  NVAETNEVVME

KAA0056221.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-3684.54Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMM
        MEECPP P +NASQ+V+DAYDR TKAN+KA++YILASMSD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKEDQSVREHVLDM+
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMM

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-3775.68Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        MEECPP P +NASQ+V+DAYD  TKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKE QSVREHVL M+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNEVVME
        NVAE N+ + +
Subjt:  NVAETNEVVME

TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-3674.77Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        MEECPP P +NAS+++RDAY+RRTKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA MKE QSVREH LDM+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNEVVME
        NVAE N  V++
Subjt:  NVAETNEVVME

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-3775.68Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        MEECPP P +NASQ+V+DAYD  TKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKE QSVREHVL M+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNEVVME
        NVAE N+ + +
Subjt:  NVAETNEVVME

TrEMBL top hitse value%identityAlignment
A0A5A7URR6 Gag/pol protein1.2e-3684.54Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMM
        MEECPP P +NASQ+V+DAYDR TKAN+KA++YILASMSD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKEDQSVREHVLDM+
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMM

A0A5A7VA67 Gag/pol protein6.1e-3875.68Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        MEECPP P +NASQ+V+DAYD  TKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKE QSVREHVL M+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNEVVME
        NVAE N+ + +
Subjt:  NVAETNEVVME

A0A5D3BM47 Gag/pol protein1.5e-3674.77Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        MEECPP P +NAS+++RDAY+RRTKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA MKE QSVREH LDM+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNEVVME
        NVAE N  V++
Subjt:  NVAETNEVVME

A0A5D3D0D9 Gag/pol protein6.1e-3875.68Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        MEECPP P +NASQ+V+DAYD  TKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNARMKE QSVREHVL M+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNEVVME
        NVAE N+ + +
Subjt:  NVAETNEVVME

A0A5D3DQJ2 Gag/pol protein1.2e-3673.87Show/hide
Query:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF
        ME+CPP P +NASQ+V+DAYD  TK N+KA++YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN  MKEDQSVREHVLDM+V F
Subjt:  MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQF

Query:  NVAETNEVVME
        N+AE N VV +
Subjt:  NVAETNEVVME

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTTAGGGATGCATATGACCGCAGGACAAAGGCCAATGAAAAGGCCCAAGTTTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCATGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGACCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTAGCAGAAACGAACGAGGTGGTAATG
GAGGTCGTCAAAATGTATGTTATAATTGAAGGGTACTGCATACTAGATGGATCTTTTGAAAAACCGCATCAACACCGACGTAATGAAGGTCGTCAAAATGGCATTCGAGC
TGGGAAGGAAGAAGAAACATGTCTAGAGGGTCATCAAGTGTTCGAAGCAAGGAGGGGTCGTCAGTGCGAGTATTATGTCATGCGATTCATGCGAGATATCATTATGTGCA
CTACCATGACAATTTCGGAAGTTATGGAAAGATCAGCCCCGACATACTCACAGGAACAAATTGACATTGTTAGATCGGAATGGGTCGAGTTCGTAGGGACGCATGCTTAC
TTTGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTTAGGGATGCATATGACCGCAGGACAAAGGCCAATGAAAAGGCCCAAGTTTACATCTTGGCCAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCATGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGACCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTAGCAGAAACGAACGAGGTGGTAATG
GAGGTCGTCAAAATGTATGTTATAATTGAAGGGTACTGCATACTAGATGGATCTTTTGAAAAACCGCATCAACACCGACGTAATGAAGGTCGTCAAAATGGCATTCGAGC
TGGGAAGGAAGAAGAAACATGTCTAGAGGGTCATCAAGTGTTCGAAGCAAGGAGGGGTCGTCAGTGCGAGTATTATGTCATGCGATTCATGCGAGATATCATTATGTGCA
CTACCATGACAATTTCGGAAGTTATGGAAAGATCAGCCCCGACATACTCACAGGAACAAATTGACATTGTTAGATCGGAATGGGTCGAGTTCGTAGGGACGCATGCTTAC
TTTGCGTAG
Protein sequenceShow/hide protein sequence
MEECPPSPIRNASQTVRDAYDRRTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAETNEVVM
EVVKMYVIIEGYCILDGSFEKPHQHRRNEGRQNGIRAGKEEETCLEGHQVFEARRGRQCEYYVMRFMRDIIMCTTMTISEVMERSAPTYSQEQIDIVRSEWVEFVGTHAY
FA