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PI0020882 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020882
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationchr08:967722..968737
RNA-Seq ExpressionPI0020882
SyntenyPI0020882
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0042651 - thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QXV93193.1 photosystem I assembly protein Ycf3 [Hopea mollissima]3.5e-3070.8Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY   AYSDRGE+AIRQGDSEIAEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        F+QAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

QXV93358.1 photosystem I assembly protein Ycf3 [Shorea henryana]3.5e-3070.8Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY   AYSDRGE+AIRQGDSEIAEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        F+QAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

YP_009566565.1 hypothetical chloroplast RF3 [Balanocarpus heimii]3.5e-3070.8Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY   AYSDRGE+AIRQGDSEIAEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        F+QAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

YP_009750678.1 hypothetical chloroplast RF3 [Dipterocarpus turbinatus]3.5e-3070.8Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY   AYSDRGE+AIRQGDSEIAEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        F+QAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

YP_010045065.1 hypothetical chloroplast RF3 [Wrightia laevis]2.0e-3069.57Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYE--LPAYSDRGEEAIRQGDSEIAE
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY    P YSDRGE+AIRQGDSEIAE
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYE--LPAYSDRGEEAIRQGDSEIAE

Query:  AWFNQAAEYLKQAIA
        AWF+QAAEY KQAIA
Subjt:  AWFNQAAEYLKQAIA

TrEMBL top hitse value%identityAlignment
A0A3P6HIA3 TPR_REGION domain-containing protein3.7e-3069.03Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYEL-PAYSDRGEEAIRQGDSEIAEA
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY + PAYSDRGE+AI+QGDSE+AEA
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYEL-PAYSDRGEEAIRQGDSEIAEA

Query:  WFNQAAEYLKQAI
        WF QAAEY KQAI
Subjt:  WFNQAAEYLKQAI

A0A411GXN2 Photosystem I assembly protein Ycf31.7e-3070.8Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY   AYSDRGE+AIRQGDSEIAEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        F+QAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

A0A6G7S8P3 Photosystem I assembly protein Ycf31.7e-3070.8Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY   AYSDRGE+AIRQGDSEIAEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        F+QAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

A0A7N2N7U5 Uncharacterized protein2.9e-3065.57Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYE----------LPAYSDRGEEAIR
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HYE           PAYSDRGE+AIR
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYE----------LPAYSDRGEEAIR

Query:  QGDSEIAEAWFNQAAEYLKQAI
        QG+SEIAEAWF+QAAEY KQAI
Subjt:  QGDSEIAEAWFNQAAEYLKQAI

A0A7S9H3N8 Hypothetical chloroplast RF39.9e-3169.57Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYE--LPAYSDRGEEAIRQGDSEIAE
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY    P YSDRGE+AIRQGDSEIAE
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYE--LPAYSDRGEEAIRQGDSEIAE

Query:  AWFNQAAEYLKQAIA
        AWF+QAAEY KQAIA
Subjt:  AWFNQAAEYLKQAIA

SwissProt top hitse value%identityAlignment
A4GG96 Photosystem I assembly protein Ycf31.6e-3066.37Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY       RGE+AIRQGDSE+AE+W
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        FNQAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

Q06FW6 Photosystem I assembly protein Ycf31.6e-3067.26Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LE+DP+DR   +  I  +          +EYYFRALE NPFLPQALNNMAVI HY       RGE+AIRQGDSEIAEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        F+QAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

Q09MH7 Photosystem I assembly protein Ycf37.3e-3167.26Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY       RGE+A+RQGDSEIAEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        FNQAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

Q2PMU4 Photosystem I assembly protein Ycf31.6e-3066.37Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY       RGE+AIRQGDSE+AE+W
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        FNQAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

Q4VZH4 Photosystem I assembly protein Ycf35.6e-3168.14Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY       RGE+AIRQGDSEIAEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAIA
        FNQAAEY KQAIA
Subjt:  FNQAAEYLKQAIA

Arabidopsis top hitse value%identityAlignment
ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.3e-3065.18Show/hide
Query:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW
        MSAQSEGN AEALQNYY AM+LEIDP+DR   +  I  +          +EYYFRALE NPFLPQA NNMAVI HY       RGE+AI+QGDSE+AEAW
Subjt:  MSAQSEGNNAEALQNYYSAMQLEIDPHDRK--VQRILRVE---------MEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAW

Query:  FNQAAEYLKQAI
        F QAAEY KQAI
Subjt:  FNQAAEYLKQAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCTCAATCCGAAGGAAATAATGCGGAAGCTCTACAGAATTATTATTCAGCTATGCAACTAGAAATCGATCCCCATGATCGAAAAGTTCAAAGAATATTGAGAGT
AGAAATGGAATATTATTTTCGGGCACTAGAACTCAACCCCTTCTTACCACAAGCTTTGAATAATATGGCTGTGATCTCTCATTACGAATTACCTGCCTATTCCGACCGGG
GAGAAGAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTTGAAACAAGCTATAGCGTCCCGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCTCAATCCGAAGGAAATAATGCGGAAGCTCTACAGAATTATTATTCAGCTATGCAACTAGAAATCGATCCCCATGATCGAAAAGTTCAAAGAATATTGAGAGT
AGAAATGGAATATTATTTTCGGGCACTAGAACTCAACCCCTTCTTACCACAAGCTTTGAATAATATGGCTGTGATCTCTCATTACGAATTACCTGCCTATTCCGACCGGG
GAGAAGAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTTGAAACAAGCTATAGCGTCCCGGTAA
Protein sequenceShow/hide protein sequence
MSAQSEGNNAEALQNYYSAMQLEIDPHDRKVQRILRVEMEYYFRALELNPFLPQALNNMAVISHYELPAYSDRGEEAIRQGDSEIAEAWFNQAAEYLKQAIASR