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PI0020958 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020958
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr11:8013280..8016736
RNA-Seq ExpressionPI0020958
SyntenyPI0020958
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037518.1 uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa]8.0e-2662.75Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV
        MS++   GKA  D+LV+IEEQMLYL+E+PD++R+LE R+EE+SEKAD IDAV GR++GLPI+ELL RV  LE    A RT+NYER +SS G  AH+EE V
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV

Query:  GE
        GE
Subjt:  GE
KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-2662.75Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV
        MS++  +GKA  D+LV++EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRV  LE     GRTVNYER DSS GSVAHIEE V
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV

Query:  GE
         E
Subjt:  GE
KAA0062476.1 uncharacterized protein E6C27_scaffold130G00660 [Cucumis melo var. makuwa]4.7e-2666Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE
        MSTTKQ+GK  AD+LV+++EQM YL+E+ D++ FL+ R+EE+ EKADAIDAVT RLDGLPI+ELLTRV TLE K  RT NYE  DSS   V+HIEE V E
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE
TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-2662.75Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV
        MS++  +GKA  D+LV++EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRV  LE     GRTVNYER DSS GSVAHIEE V
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV

Query:  GE
         E
Subjt:  GE
TYK28632.1 uncharacterized protein E5676_scaffold2030G00580 [Cucumis melo var. makuwa]6.1e-2664Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE
        MS+    GKA  D+LV++EEQMLYL+E+P+++RFLE R+EE++EKAD IDAV GR+ GL I+ELL RV TLE K GRT ++ER DSS GSVAHIEE V E
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE
TrEMBL top hitse value%identityAlignment
A0A5A7T3M3 Reverse transcriptase1.7e-2662.75Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV
        MS++  +GKA  D+LV++EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRV  LE     GRTVNYER DSS GSVAHIEE V
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV

Query:  GE
         E
Subjt:  GE
A0A5D3BQN3 Retrotrans_gag domain-containing protein3.9e-2662.75Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV
        MS++   GKA  D+LV+IEEQMLYL+E+PD++R+LE R+EE+SEKAD IDAV GR++GLPI+ELL RV  LE    A RT+NYER +SS G  AH+EE V
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV

Query:  GE
        GE
Subjt:  GE
A0A5D3BYE6 Reverse transcriptase1.7e-2662.75Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV
        MS++  +GKA  D+LV++EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G PI+EL+TRV  LE     GRTVNYER DSS GSVAHIEE V
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLE--AKAGRTVNYERWDSSMGSVAHIEEWV

Query:  GE
         E
Subjt:  GE
A0A5D3DUL1 Uncharacterized protein2.3e-2666Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE
        MSTTKQ+GK  AD+LV+++EQM YL+E+ D++ FL+ R+EE+ EKADAIDAVT RLDGLPI+ELLTRV TLE K  RT NYE  DSS   V+HIEE V E
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE
A0A5D3DYI1 Retrotrans_gag domain-containing protein3.0e-2664Show/hide
Query:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE
        MS+    GKA  D+LV++EEQMLYL+E+P+++RFLE R+EE++EKAD IDAV GR+ GL I+ELL RV TLE K GRT ++ER DSS GSVAHIEE V E
Subjt:  MSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACATGAAAAAGTTGAGCTTGAAGTATGGCCACTACTTGCTACACCTGATGAAGCAACAATGTCATACTTTGCACCCTTCCTTGAGGCTGAAAAAATGGTTCTACA
AGAGGCTGAAGATGAAATCAGACGGAGTCAACCATTGGAAAGAGTGGCTCAGATGTCATTGAATAGAGACATGTCTACAACGAAACAGATGGGCAAGGCCCACGCAGACC
AATTGGTAAAGATCGAAGAGCAGATGCTCTACCTGTTGGAAATTCCGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAAGAAGTTTCCGAGAAAGCTGACGCTATTGAT
GCGGTGACCGGTCGCCTCGACGGATTACCTATAAAAGAGTTGTTGACAAGAGTTGGCACTCTAGAGGCAAAGGCTGGAAGAACTGTTAACTACGAGCGTTGGGACAGTTC
AATGGGCTCTGTTGCCCACATAGAAGAATGGGTTGGCGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACACATGAAAAAGTTGAGCTTGAAGTATGGCCACTACTTGCTACACCTGATGAAGCAACAATGTCATACTTTGCACCCTTCCTTGAGGCTGAAAAAATGGTTCTACA
AGAGGCTGAAGATGAAATCAGACGGAGTCAACCATTGGAAAGAGTGGCTCAGATGTCATTGAATAGAGACATGTCTACAACGAAACAGATGGGCAAGGCCCACGCAGACC
AATTGGTAAAGATCGAAGAGCAGATGCTCTACCTGTTGGAAATTCCGGACACCGTCCGCTTCTTGGAAGGTCGGATTGAAGAAGTTTCCGAGAAAGCTGACGCTATTGAT
GCGGTGACCGGTCGCCTCGACGGATTACCTATAAAAGAGTTGTTGACAAGAGTTGGCACTCTAGAGGCAAAGGCTGGAAGAACTGTTAACTACGAGCGTTGGGACAGTTC
AATGGGCTCTGTTGCCCACATAGAAGAATGGGTTGGCGAGTAG
Protein sequenceShow/hide protein sequence
MTHEKVELEVWPLLATPDEATMSYFAPFLEAEKMVLQEAEDEIRRSQPLERVAQMSLNRDMSTTKQMGKAHADQLVKIEEQMLYLLEIPDTVRFLEGRIEEVSEKADAID
AVTGRLDGLPIKELLTRVGTLEAKAGRTVNYERWDSSMGSVAHIEEWVGE