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PI0020985 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0020985
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:1749083..1749627
RNA-Seq ExpressionPI0020985
SyntenyPI0020985
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]7.0e-5164.71Show/hide
Query:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF
        +V   GW+S+NGTFRP Y + L +MM E++PG  + A+T IDCRIK LKR FQAI+EMR P+CSGFGWNDE KCI+AEK+L+DNWV+SH AAKGLLNKPF
Subjt:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF

Query:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS
        P+YD+L YVFGRDRATG   ETF D G N    GYD F   DGN+ +FP +YS
Subjt:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS

KAA0065929.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-5165.56Show/hide
Query:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF
        +V   GW+S+NGTFRP Y + L +MM E++PG  + A+T IDCRIK LKR FQAI+EMR P+CSGFGWNDE+KCIIAEK+L+DNWV+SH AAKGLLNKPF
Subjt:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF

Query:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTM
        P+YD+L YVFGRDRATG   ETF D G N +  GYD F   DGN+ +FP M
Subjt:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTM

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-5165.36Show/hide
Query:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF
        +V   GW+S+NGTFRP Y + L +MM E++PG  + A+T IDCRIK LKR FQAI+EMR P+CSGFGWNDE KCIIAEK+L+DNWV+SH AAKGLLNKPF
Subjt:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF

Query:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS
        P+YD+L YVFGRDRATG   ETF D G N    GYD F   DGN+ +FP +YS
Subjt:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]7.0e-5164.71Show/hide
Query:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF
        +V   GW+S+NGTFRP Y + L +MM E++PG  + A+T IDCRIK LKR FQAI+EMR P+CSGFGWNDE KCI+AEK+L+DNWV+SH AAKGLLNKPF
Subjt:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF

Query:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS
        P+YD+L YVFGRDRATG   ETF D G N    GYD F   DGN+ +FP +YS
Subjt:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS

XP_031743896.1 uncharacterized protein LOC116404722 [Cucumis sativus]1.3e-5262.91Show/hide
Query:  VPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFP
        V A GW+S+NGTFRP Y + L +MM  ++PG N+  +T IDC IK LKR++QAI+EM DPSCSGFGWND+ KCI+AEK+L+DNWV+SHLAAKGLLNKPFP
Subjt:  VPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFP

Query:  HYDDLWYVFGRDRATGGRGETFVDAGLNMSAGYDGFPAYDGNDMEFPTMYS
        +YD L Y+FG+DRATG   ETF D G N+  G++ FP  D NDM+ P+M+S
Subjt:  HYDDLWYVFGRDRATGGRGETFVDAGLNMSAGYDGFPAYDGNDMEFPTMYS

TrEMBL top hitse value%identityAlignment
A0A5A7TRV1 Retrotransposon protein3.4e-5164.71Show/hide
Query:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF
        +V   GW+S+NGTFRP Y + L +MM E++PG  + A+T IDCRIK LKR FQAI+EMR P+CSGFGWNDE KCI+AEK+L+DNWV+SH AAKGLLNKPF
Subjt:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF

Query:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS
        P+YD+L YVFGRDRATG   ETF D G N    GYD F   DGN+ +FP +YS
Subjt:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS

A0A5A7VES2 Retrotransposon protein2.6e-5165.36Show/hide
Query:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF
        +V   GW+S+NGTFRP Y + L +MM E++PG  + A+T IDCRIK LKR FQAI+EMR P+CSGFGWNDE KCIIAEK+L+DNWV+SH AAKGLLNKPF
Subjt:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF

Query:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS
        P+YD+L YVFGRDRATG   ETF D G N    GYD F   DGN+ +FP +YS
Subjt:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS

A0A5A7VKT2 Retrotransposon protein2.0e-5165.56Show/hide
Query:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF
        +V   GW+S+NGTFRP Y + L +MM E++PG  + A+T IDCRIK LKR FQAI+EMR P+CSGFGWNDE+KCIIAEK+L+DNWV+SH AAKGLLNKPF
Subjt:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF

Query:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTM
        P+YD+L YVFGRDRATG   ETF D G N +  GYD F   DGN+ +FP M
Subjt:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTM

A0A5D3CWL2 Retrotransposon protein3.4e-5164.71Show/hide
Query:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF
        +V   GW+S+NGTFRP Y + L +MM E++PG  + A+T IDCRIK LKR FQAI+EMR P+CSGFGWNDE KCI+AEK+L+DNWV+SH AAKGLLNKPF
Subjt:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF

Query:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS
        P+YD+L YVFGRDRATG   ETF D G N    GYD F   DGN+ +FP +YS
Subjt:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS

A0A5D3DCZ1 Retrotransposon protein3.4e-5164.71Show/hide
Query:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF
        +V   GW+S+NGTFRP Y + L +MM E++PG  + A+T IDCRIK LKR FQAI+EMR P+CSGFGWNDE KCI+AEK+L+DNWV+SH AAKGLLNKPF
Subjt:  IVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITAST-IDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPF

Query:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS
        P+YD+L YVFGRDRATG   ETF D G N    GYD F   DGN+ +FP +YS
Subjt:  PHYDDLWYVFGRDRATGGRGETFVDAGLN-MSAGYDGFPAYDGNDMEFPTMYS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein2.0e-0829.73Show/hide
Query:  WRSNNGTF-RPSYHSHLQKMMVERMPGHNITASTIDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFPHYDDL
        WR ++G   + +  S L   + +R+ G N        R+K LK  +Q+  +++  S SGFGW+ E K   A  +++ +++K+H   K +  +   H++DL
Subjt:  WRSNNGTF-RPSYHSHLQKMMVERMPGHNITASTIDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFPHYDDL

Query:  WYVFGRDRATG
          +FG   ATG
Subjt:  WYVFGRDRATG

AT2G24960.2 unknown protein3.3e-0627.03Show/hide
Query:  RIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFPHYDDLWYVFGRDRATG
        R K L+R +  I  + +   +GF W+     +IA+ D+++ ++++H  A+    K  P Y +L ++FG++ + G
Subjt:  RIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFPHYDDLWYVFGRDRATG

AT4G02210.1 unknown protein1.7e-0728.57Show/hide
Query:  NITASTIDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFPHYDDLWYVFG
        N     +  R K L+R F AI  +      GF W++E + + A+ +++ +++K+H  A+  + +P P+Y DL  + G
Subjt:  NITASTIDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFPHYDDLWYVFG

AT4G02210.2 unknown protein1.7e-0728.57Show/hide
Query:  NITASTIDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFPHYDDLWYVFG
        N     +  R K L+R F AI  +      GF W++E + + A+ +++ +++K+H  A+  + +P P+Y DL  + G
Subjt:  NITASTIDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFPHYDDLWYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGTGGAATTGTACCAGCCAGCGGCTGGAGGTCGAACAACGGGACGTTTAGACCCAGTTACCATAGTCATCTGCAGAAAATGATGGTCGAGAGGATGCCGGGACA
TAACATAACGGCTTCGACCATTGATTGTCGGATAAAGATGCTTAAAAGAGCGTTCCAAGCCATATCTGAAATGAGGGACCCATCGTGTAGTGGGTTCGGTTGGAACGATG
AGCTCAAATGCATCATTGCCGAGAAAGACTTGTACGACAATTGGGTGAAGAGTCATCTAGCCGCGAAGGGCCTCCTAAACAAACCTTTTCCCCATTACGACGACCTATGG
TACGTCTTTGGAAGAGATCGTGCTACAGGAGGTCGTGGTGAAACCTTTGTCGATGCTGGGTTGAACATGTCTGCAGGGTACGATGGATTTCCCGCTTATGACGGGAACGA
TATGGAGTTCCCCACGATGTACAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGTGGAATTGTACCAGCCAGCGGCTGGAGGTCGAACAACGGGACGTTTAGACCCAGTTACCATAGTCATCTGCAGAAAATGATGGTCGAGAGGATGCCGGGACA
TAACATAACGGCTTCGACCATTGATTGTCGGATAAAGATGCTTAAAAGAGCGTTCCAAGCCATATCTGAAATGAGGGACCCATCGTGTAGTGGGTTCGGTTGGAACGATG
AGCTCAAATGCATCATTGCCGAGAAAGACTTGTACGACAATTGGGTGAAGAGTCATCTAGCCGCGAAGGGCCTCCTAAACAAACCTTTTCCCCATTACGACGACCTATGG
TACGTCTTTGGAAGAGATCGTGCTACAGGAGGTCGTGGTGAAACCTTTGTCGATGCTGGGTTGAACATGTCTGCAGGGTACGATGGATTTCCCGCTTATGACGGGAACGA
TATGGAGTTCCCCACGATGTACAGTTAG
Protein sequenceShow/hide protein sequence
MSGGIVPASGWRSNNGTFRPSYHSHLQKMMVERMPGHNITASTIDCRIKMLKRAFQAISEMRDPSCSGFGWNDELKCIIAEKDLYDNWVKSHLAAKGLLNKPFPHYDDLW
YVFGRDRATGGRGETFVDAGLNMSAGYDGFPAYDGNDMEFPTMYS