| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0053863.1 DNA-directed RNA polymerase V subunit 5A [Cucumis melo var. makuwa] | 2.6e-115 | 97.27 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYT+NSPDIDLSLQQFR+IFGQ PDVDRLKL AAHHSDPSKRVLV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAH
GLEKGQVVKVTYDGDMT AH
Subjt: GLEKGQVVKVTYDGDMTRAH
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| XP_004136650.1 DNA-directed RNA polymerase V subunit 5A [Cucumis sativus] | 1.6e-120 | 96.92 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYT+NSP+ID SLQQFRE FGQ PDVDRLKLSAAHHSDPSKRVLV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCVW
GLEKGQVVKVTYDGDMTRAH+TYRCVW
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCVW
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| XP_008443287.1 PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo] | 1.6e-120 | 97.36 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYT+NSPDIDLSLQQFR+IFGQ PDVDRLKL AAHHSDPSKRVLV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCVW
GLEKGQVVKVTYDGDMT AHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCVW
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| XP_023539155.1 DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo] | 3.0e-111 | 89.43 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGF EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYT+N DIDL+LQQFREI+GQ PDVDRLKLSAAH +DPSKR+LVIFCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQI NK++LHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCVW
GLEKGQ+VKVTYDGDMTR+HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCVW
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| XP_038903402.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] | 2.0e-115 | 93.39 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NS DIDLSLQQFREI+GQSPDVDRLKLSA H SDPSKRVLVIFCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVL+EEEKQKLL+QYSIEEKQLPRMLR DA+ARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCVW
GLEKGQVVKVTYDGDMTR+HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCVW
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LCG9 Uncharacterized protein | 7.7e-121 | 96.92 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYT+NSP+ID SLQQFRE FGQ PDVDRLKLSAAHHSDPSKRVLV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCVW
GLEKGQVVKVTYDGDMTRAH+TYRCVW
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCVW
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| A0A1S3B7M5 DNA-directed RNA polymerase V subunit 5A | 7.7e-121 | 97.36 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYT+NSPDIDLSLQQFR+IFGQ PDVDRLKL AAHHSDPSKRVLV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCVW
GLEKGQVVKVTYDGDMT AHVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCVW
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| A0A5D3DQJ3 DNA-directed RNA polymerase V subunit 5A | 1.3e-115 | 97.27 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYT+NSPDIDLSLQQFR+IFGQ PDVDRLKL AAHHSDPSKRVLV+FCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAH
GLEKGQVVKVTYDGDMT AH
Subjt: GLEKGQVVKVTYDGDMTRAH
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| A0A6J1E191 DNA-directed RNA polymerase V subunit 5A | 5.5e-111 | 89.43 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGFE EPN VE GTCLSSYID+G+TESHRYFL RRTV+EML+DRGYT + D DL+LQQFREI+GQSPDVDRLKLSA H SDPSKR+LVIFCGTG+V
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KVNAIRNIAGQI NKD+LHGLILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCVW
GLEKGQVVKVTYDGDMT +HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCVW
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| A0A6J1I733 DNA-directed RNA polymerase V subunit 5A isoform X2 | 7.2e-111 | 88.99 | Show/hide |
Query: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
MEEDGF EPN VE GTCLSSYIDDGTTESHRY+LSRRTV+EML+DRGYT+N DIDL+LQQFREI+GQ PDVDRLKLSAAH +DPSKR+LVIFCGTGAV
Subjt: MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
KV+AIRNIAGQI NK++LHGLILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCVW
LEKGQ+VKVTYDGDMTR+HVTYRCVW
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCVW
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.0e-29 | 34.45 | Show/hide |
Query: DGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDR-----LKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLH
D E++R + R+TV++M+ DRGY V ++D L+ F+E FG P + L + AH+ DP+ ++ V F + + I+ I Q+ + ++
Subjt: DGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDR-----LKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLH
Query: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
I++VQ +T A +++ + + +E F +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ +
Subjt: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RAHVTYRCV
++TYR V
Subjt: RAHVTYRCV
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| Q9M1H8 DNA-directed RNA polymerase V subunit 5C | 3.6e-51 | 44.25 | Show/hide |
Query: EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
EE E + + GT C+S D G ES R++L+R T EML+DRGY VN ++ L+L +FR +FG+ P+++RL++ SDP K++LV+F GT +
Subjt: EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
V ++R + QI+N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEK++LL+++++E+KQLP + D+ RYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCV
GL+K QVVK+TY + VTYRC+
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCV
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| Q9M1J2 DNA-directed RNA polymerase V subunit 5A | 7.3e-76 | 63.33 | Show/hide |
Query: CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDS
CLS Y+D + ESHRY+L+RR ++ML+DRGY V+ DI+LSL FR ++G+ PDVDRL++SA H SD +K+V ++F GT VKVNAIR++ I ++++
Subjt: CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDS
Query: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RAHVTYRCVW
+HV +RCVW
Subjt: RAHVTYRCVW
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| Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 1.5e-28 | 33.49 | Show/hide |
Query: DGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDR-----LKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLH
D E++R + R+TV++M+ DRGY V ++D L+ F+ +G P + L + AH+ DP+ ++ V F + + I+ I Q+ + ++
Subjt: DGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDR-----LKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLH
Query: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
I++VQ +T A +++ + + +E F +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ +
Subjt: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RAHVTYRCV
++TYR V
Subjt: RAHVTYRCV
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| Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B | 3.5e-70 | 60.78 | Show/hide |
Query: IDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLI
I + E H+Y+L+RRT +EML+DRGY V+ DI+LSLQQFR ++G+ PDVD L++SA H D SK++ V+FCGTG VKVNA+R IA + +++++ GLI
Subjt: IDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLI
Query: LIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHVT
L++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+ D I RYYGLE GQV+KVTY +++ +HVT
Subjt: LIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHVT
Query: YRCV
YRCV
Subjt: YRCV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 2.5e-71 | 60.78 | Show/hide |
Query: IDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLI
I + E H+Y+L+RRT +EML+DRGY V+ DI+LSLQQFR ++G+ PDVD L++SA H D SK++ V+FCGTG VKVNA+R IA + +++++ GLI
Subjt: IDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLI
Query: LIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHVT
L++Q+ ITNQA+KAVELFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQLPR+ D I RYYGLE GQV+KVTY +++ +HVT
Subjt: LIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHVT
Query: YRCV
YRCV
Subjt: YRCV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 2.4e-29 | 36 | Show/hide |
Query: ESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQ
E R + ++T+++ML+DRGY + ++ ++ QQF G + + L A +D S ++ + F V V ++ ++ +++ IL+VQ
Subjt: ESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQ
Query: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHVTYRCV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 2.6e-52 | 44.25 | Show/hide |
Query: EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
EE E + + GT C+S D G ES R++L+R T EML+DRGY VN ++ L+L +FR +FG+ P+++RL++ SDP K++LV+F GT +
Subjt: EEDGFEAEPNPVEFGT-CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAV
Query: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
V ++R + QI+N LH +IL++Q+++ + A KA+ F F VE F I DLLVNITKH +P ++L +EEK++LL+++++E+KQLP + D+ RYY
Subjt: KVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVTYDGDMTRAHVTYRCV
GL+K QVVK+TY + VTYRC+
Subjt: GLEKGQVVKVTYDGDMTRAHVTYRCV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 5.2e-77 | 63.33 | Show/hide |
Query: CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDS
CLS Y+D + ESHRY+L+RR ++ML+DRGY V+ DI+LSL FR ++G+ PDVDRL++SA H SD +K+V ++F GT VKVNAIR++ I ++++
Subjt: CLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQSPDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDS
Query: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
+ GLIL++QN +TNQA+KA+ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV Y G++T
Subjt: LHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RAHVTYRCVW
+HV +RCVW
Subjt: RAHVTYRCVW
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 4.9e-27 | 34.78 | Show/hide |
Query: IDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQS---PDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLH
+ D E R F RRTV++ML+DRGYT+ D++L ++F + F ++ + + L +SA +P+ ++ V + V V I+ D +H
Subjt: IDDGTTESHRYFLSRRTVVEMLKDRGYTVNSPDIDLSLQQFREIFGQS---PDVDRLKLSAAHHSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLH
Query: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
I++V IT A AV + +E+F+ +L+ NIT+H L + VL ++ K+KLL Y++++ QLPR+L TD +ARYYGL++GQVVK+ +
Subjt: GLILIVQNQITNQAMKAVELFS--FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMT
Query: RAHVTYR
+ TYR
Subjt: RAHVTYR
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