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PI0021217 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021217
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:16096591..16098204
RNA-Seq ExpressionPI0021217
SyntenyPI0021217
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.3e-5970.18Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN GWRDN NLRWGNDNQ+  Q   +S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        TT ISK++GKGKLPAQPD+ANVSAISLRSGK L+TP + E+KVTS    L  KNE KEEKVET+  PS+SK
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-5969.59Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN GWRDN NLRWGNDNQ+  Q   +S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        TT ISK++GKGKL AQPDHANVS ISLRS K L+TP + E+KVTS P  L  KNE KEEK ET+  PS+SK
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-5970.18Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN GWRDN NLRWGNDNQ+  Q  S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        TT ISK++GKGKLPAQ DHANVSAISLRSGK L+TP + E+KVTS P  L  KNE KEEKVET+  PS+SK
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-5966.86Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN GWRDNLNLRWGNDNQ+  Q  S+S+NQGTNLED++KALATNT+SFQ +MKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSKGKIM
        TT ISK++GKGKLPAQPDHANVSAISLRSGK L+TP + E+K+TS P  L  KNE KEEKV++    ++  G+ +
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSKGKIM

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]4.0e-5969.59Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN GWRDN NLRWGNDNQ+  Q   +S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        TT ISK++GKGKL AQPDHANVS ISLRS K L+TP + E+KVTS P  L  KNE KEEK ET+  PS+SK
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.9e-5969.59Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN GWRDN NLRWGNDNQ+  Q   +S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        TT ISK++GKGKL AQPDHANVS ISLRS K L+TP + E+KVTS P  L  KNE KEEK ET+  PS+SK
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

A0A5A7VQ60 Retrotransposon gag protein6.6e-6070.18Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN GWRDN NLRWGNDNQ+  Q  S+S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        TT ISK++GKGKLPAQ DHANVSAISLRSGK L+TP + E+KVTS P  L  KNE KEEKVET+  PS+SK
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

A0A5D3CB46 Retrotransposon gag protein2.5e-5966.86Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN GWRDNLNLRWGNDNQ+  Q  S+S+NQGTNLED++KALATNT+SFQ +MKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSKGKIM
        TT ISK++GKGKLPAQPDHANVSAISLRSGK L+TP + E+K+TS P  L  KNE KEEKV++    ++  G+ +
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSKGKIM

A0A5D3DCG3 Retrotransposon gag protein1.9e-5969.59Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN GWRDN NLRWGNDNQ+  Q   +S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        TT ISK++GKGKL AQPDHANVS ISLRS K L+TP + E+KVTS P  L  KNE KEEK ET+  PS+SK
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

E5GBZ4 Retrotransposon gag protein1.1e-5970.18Show/hide
Query:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL
        G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN GWRDN NLRWGNDNQ+  Q   +S+NQGTNLED++KALATNT+SFQ EMKQQ++QL
Subjt:  GGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQL

Query:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK
        TT ISK++GKGKLPAQPD+ANVSAISLRSGK L+TP + E+KVTS    L  KNE KEEKVET+  PS+SK
Subjt:  TT-ISKLEGKGKLPAQPDHANVSAISLRSGKTLETP-SNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGTTGCCGGGGAGCGACGGTGGATCTGTAAAAGTTGCAAAATGTGGAGTTTGCGGTTTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAACGTCGGTTGGAGAGACAACCTTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGTAACTT
CGTCTTCAAACAATCAAGGTACTAATTTAGAAGACTTAGTAAAAGCTCTTGCAACTAATACAATTTCTTTTCAGAATGAAATGAAACAACAAATATCTCAACTAACTACA
ATAAGCAAACTAGAAGGAAAAGGCAAGCTTCCAGCTCAGCCTGATCACGCGAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGACTCTGGAAACCCCTTCTAACGAAGA
AAAGGTAACTTCTATCCCTAACCTTCTAGAAGATAAGAATGAGAAAAAGGAAGAAAAAGTAGAAACAAGTACCCCACCATCTTCATCAAAAGGTAAAATCATGTTAATGA
TTATTCTCCTTATATCCCTAATGCTCCTTTTCCTTCCAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGTTGCCGGGGAGCGACGGTGGATCTGTAAAAGTTGCAAAATGTGGAGTTTGCGGTTTAATTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAACGTCGGTTGGAGAGACAACCTTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAGTAACTT
CGTCTTCAAACAATCAAGGTACTAATTTAGAAGACTTAGTAAAAGCTCTTGCAACTAATACAATTTCTTTTCAGAATGAAATGAAACAACAAATATCTCAACTAACTACA
ATAAGCAAACTAGAAGGAAAAGGCAAGCTTCCAGCTCAGCCTGATCACGCGAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGACTCTGGAAACCCCTTCTAACGAAGA
AAAGGTAACTTCTATCCCTAACCTTCTAGAAGATAAGAATGAGAAAAAGGAAGAAAAAGTAGAAACAAGTACCCCACCATCTTCATCAAAAGGTAAAATCATGTTAATGA
TTATTCTCCTTATATCCCTAATGCTCCTTTTCCTTCCAGATTAG
Protein sequenceShow/hide protein sequence
MASLPGSDGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNVGWRDNLNLRWGNDNQRPAQVTSSSNNQGTNLEDLVKALATNTISFQNEMKQQISQLTT
ISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSNEEKVTSIPNLLEDKNEKKEEKVETSTPPSSSKGKIMLMIILLISLMLLFLPD