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PI0021238 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021238
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:16797205..16797573
RNA-Seq ExpressionPI0021238
SyntenyPI0021238
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]4.3e-4074.59Show/hide
Query:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKS
        MT  VAIQL+GFTN +DLW+A QD FGVQS+A+EDFLRQ  QTTRK NTKME+YL  M+ NVDNLGQ GSPVP RAL+SQVLL LDE YN VIVV QGK 
Subjt:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKS

Query:  DISWLDMQSELLISGKRLEHQN
        DISWLDMQS+LLI  K L+HQN
Subjt:  DISWLDMQSELLISGKRLEHQN

KAA0057475.1 uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa]1.4e-3572.57Show/hide
Query:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPV-IVVQGKS
        M   VA+QL+GF  AKDLWEA+Q+LFG++S+A+E FLR TFQTTR+ N KMEDYLR M+ N DNLGQAGSPVP R L+SQVLL LDE YNPV  V+QGK 
Subjt:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPV-IVVQGKS

Query:  DISWLDMQSELLI
        DISWLDMQSELLI
Subjt:  DISWLDMQSELLI

KGN65684.1 hypothetical protein Csa_019689 [Cucumis sativus]1.0e-4173.77Show/hide
Query:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKS
        +T +V +QLIGFTNAKD+WEA  D FGV+S+A+EDFLRQTFQTTRK N+ MEDYLR M+ N DNLGQA SP+P RAL+SQVLL LDE YNPVIVV QGK 
Subjt:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKS

Query:  DISWLDMQSELLISGKRLEHQN
        +ISWLDMQS+LLI  KRL+HQN
Subjt:  DISWLDMQSELLISGKRLEHQN

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-3973.73Show/hide
Query:  VAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKSDISW
        +AIQL+GFTNAKDLWEA QDLFGVQS+A+EDFLRQ FQTTRK     EDYLR M+ N D LGQAGSPVP RA +SQ LL LDE YNPVI V+QGK +ISW
Subjt:  VAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKSDISW

Query:  LDMQSELLISGKRLEHQN
        +DMQSELL   KRLEHQ+
Subjt:  LDMQSELLISGKRLEHQN

XP_038904321.1 uncharacterized protein LOC120090675 [Benincasa hispida]1.7e-3666.39Show/hide
Query:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKS
        MT K+AIQ++GF  A+DLW  +Q LFG+QS+A+ED+LR  FQTTRK N KMEDYLRTM+ NVDNL QAGSPVP RALV QVLL LDE YN ++  +QG++
Subjt:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKS

Query:  DISWLDMQSELLISGKRLEHQN
        D+SWLDMQS+LL+  +RLEHQ+
Subjt:  DISWLDMQSELLISGKRLEHQN

TrEMBL top hitse value%identityAlignment
A0A0A0LXB7 Uncharacterized protein5.0e-4273.77Show/hide
Query:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKS
        +T +V +QLIGFTNAKD+WEA  D FGV+S+A+EDFLRQTFQTTRK N+ MEDYLR M+ N DNLGQA SP+P RAL+SQVLL LDE YNPVIVV QGK 
Subjt:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKS

Query:  DISWLDMQSELLISGKRLEHQN
        +ISWLDMQS+LLI  KRL+HQN
Subjt:  DISWLDMQSELLISGKRLEHQN

A0A5A7SIT7 Uncharacterized protein2.1e-4074.59Show/hide
Query:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKS
        MT  VAIQL+GFTN +DLW+A QD FGVQS+A+EDFLRQ  QTTRK NTKME+YL  M+ NVDNLGQ GSPVP RAL+SQVLL LDE YN VIVV QGK 
Subjt:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVV-QGKS

Query:  DISWLDMQSELLISGKRLEHQN
        DISWLDMQS+LLI  K L+HQN
Subjt:  DISWLDMQSELLISGKRLEHQN

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-3973.73Show/hide
Query:  VAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKSDISW
        +AIQL+GFTNAKDLWEA QDLFGVQS+A+EDFLRQ FQTTRK     EDYLR M+ N D LGQAGSPVP RA +SQ LL LDE YNPVI V+QGK +ISW
Subjt:  VAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKSDISW

Query:  LDMQSELLISGKRLEHQN
        +DMQSELL   KRLEHQ+
Subjt:  LDMQSELLISGKRLEHQN

A0A5D3E3L7 Uncharacterized protein7.0e-3672.57Show/hide
Query:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPV-IVVQGKS
        M   VA+QL+GF  AKDLWEA+Q+LFG++S+A+E FLR TFQTTR+ N KMEDYLR M+ N DNLGQAGSPVP R L+SQVLL LDE YNPV  V+QGK 
Subjt:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPV-IVVQGKS

Query:  DISWLDMQSELLI
        DISWLDMQSELLI
Subjt:  DISWLDMQSELLI

A0A6J1D5J0 uncharacterized protein LOC1110175012.3e-3158.87Show/hide
Query:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKS
        MT +VA Q++G+ NA DLW A+Q+LFGVQS+A+ED+LRQ FQ TRK + KM D+LR M+++ DNLGQAGSPVP R+L+SQVLL LDE YNPV+  +QGK 
Subjt:  MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVI-VVQGKS

Query:  DISWLDMQSEL--LISGKRLEHQN
         ISW +MQ+E   +  G + ++QN
Subjt:  DISWLDMQSEL--LISGKRLEHQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCAAAAGTGGCTATTCAGTTGATAGGATTCACCAATGCCAAAGATCTGTGGGAAGCAATGCAGGATCTCTTTGGTGTTCAATCCAAAGCTAAAGAAGATTTTCT
CCGCCAAACTTTTCAAACCACCAGAAAATGTAATACAAAAATGGAAGATTATTTGCGAACTATGCAAAATAATGTTGACAATCTTGGTCAAGCTGGTAGTCCAGTTCCTC
TTCGTGCTCTTGTCTCACAGGTTTTGCTGGAATTAGATGAAACTTATAATCCAGTGATTGTTGTGCAAGGAAAGTCTGACATATCTTGGCTAGATATGCAATCTGAACTT
CTTATCTCTGGAAAAAGGTTGGAACATCAAAATTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTCAAAAGTGGCTATTCAGTTGATAGGATTCACCAATGCCAAAGATCTGTGGGAAGCAATGCAGGATCTCTTTGGTGTTCAATCCAAAGCTAAAGAAGATTTTCT
CCGCCAAACTTTTCAAACCACCAGAAAATGTAATACAAAAATGGAAGATTATTTGCGAACTATGCAAAATAATGTTGACAATCTTGGTCAAGCTGGTAGTCCAGTTCCTC
TTCGTGCTCTTGTCTCACAGGTTTTGCTGGAATTAGATGAAACTTATAATCCAGTGATTGTTGTGCAAGGAAAGTCTGACATATCTTGGCTAGATATGCAATCTGAACTT
CTTATCTCTGGAAAAAGGTTGGAACATCAAAATTATTAG
Protein sequenceShow/hide protein sequence
MTSKVAIQLIGFTNAKDLWEAMQDLFGVQSKAKEDFLRQTFQTTRKCNTKMEDYLRTMQNNVDNLGQAGSPVPLRALVSQVLLELDETYNPVIVVQGKSDISWLDMQSEL
LISGKRLEHQNY