; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0021335 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021335
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr12:3213057..3216458
RNA-Seq ExpressionPI0021335
SyntenyPI0021335
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO73521.1 gag-pol polyprotein [Glycine max]2.1e-9245.76Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+GSNY YWKARM AFLKSL  RTWKA+I GW HP + + EG   + LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DAW+IL I HEGT+KVK+SRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  M 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++VLL KQF + + R+++R   +      D     R G+ + K+ D +   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE
            +   C  C G GH  +EC T+L++ RKG S    D ESE   D++ +V AL       T  F T +D S +  E   +++   ++    +  K+++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE

Query:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        Q+   K+ I++L  +     + IS++K E+    ++ + M+KS++MLN
Subjt:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

AAO73523.1 gag-pol polyprotein [Glycine max]2.3e-9145.54Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+GSNY YWKARM AFLKSL  RTWKA+I GW HP + + EG   + LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DA +IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  M 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++VLL KQF + + R+++R   +      D     R G+ + KR D +   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE
            +   C  C G GH  +EC T+L++ RKG S    D ESE   D++ +V AL+         F T +D S +  E   +++   ++    +  K+++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE

Query:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        Q+   K+ I++L  +     + IS++K E+    ++ + M+KS++MLN
Subjt:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

AAO73527.1 gag-pol polyprotein [Glycine max]7.2e-9346.21Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+GSNY YWKARM AFLKSL  RTWKA+I GW HP + + EG   + LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DAW+IL I HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  M 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++VLL KQF + + R+++R   +      D     R G+ + KR D +   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE
            +   C  C G GH  +EC T+L++ RKG S    D ESE   D++ +V AL       T  F T +D S +  E   +++   ++    +  K+++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE

Query:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        Q+   K+ I++L  +     + IS++K E+    ++ + M KS++MLN
Subjt:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

AAO73529.1 gag-pol polyprotein [Glycine max]7.2e-9345.88Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+G+NY YWKARM AFLKSL  RTWKA+I GW HP + + EG     LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DAW+IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  M 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++V L KQF + + R++RR   +    + D     R G+ + ++ DE+   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD--ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQE----DLKVI
            +   CR C G GH ++EC T+L++QRKG S    D  ESE   D++ +V AL       T  F + +D S +  E   +++   ++E      K++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD--ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQE----DLKVI

Query:  EQQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        +Q+   K+ I+ L  +     + IS +K E+    ++ + M+KS++MLN
Subjt:  EQQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

NP_001235160.1 gag-protease polyprotein [Glycine max]2.5e-9346.1Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+G+NY YWKARM AFLKSL  RTWKA+I  W HP + + EG   + LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DAW+IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  + 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++VLL KQF + + R++RR   +     R+     R G+ + KR DE+   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD--ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQE----DLKVI
            + F C  C G GH ++EC T+L++QRKG S    D  ESE   D++ +V AL       T  F + +D S +  E   +++   ++E      K++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD--ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQE----DLKVI

Query:  EQQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        +Q+   K+ I+ L  +     + IS++K E+    ++ + M+KS++MLN
Subjt:  EQQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

TrEMBL top hitse value%identityAlignment
Q84VH6 Gag-pol polyprotein3.5e-9345.88Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+G+NY YWKARM AFLKSL  RTWKA+I GW HP + + EG     LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DAW+IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  M 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++V L KQF + + R++RR   +    + D     R G+ + ++ DE+   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD--ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQE----DLKVI
            +   CR C G GH ++EC T+L++QRKG S    D  ESE   D++ +V AL       T  F + +D S +  E   +++   ++E      K++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD--ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQE----DLKVI

Query:  EQQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        +Q+   K+ I+ L  +     + IS +K E+    ++ + M+KS++MLN
Subjt:  EQQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

Q84VH8 Gag-pol polyprotein3.5e-9346.21Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+GSNY YWKARM AFLKSL  RTWKA+I GW HP + + EG   + LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DAW+IL I HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  M 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++VLL KQF + + R+++R   +      D     R G+ + KR D +   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE
            +   C  C G GH  +EC T+L++ RKG S    D ESE   D++ +V AL       T  F T +D S +  E   +++   ++    +  K+++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE

Query:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        Q+   K+ I++L  +     + IS++K E+    ++ + M KS++MLN
Subjt:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

Q84VI2 Gag-pol polyprotein1.1e-9145.54Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+GSNY YWKARM AFLKSL  RTWKA+I GW HP + + EG   + LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DA +IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  M 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++VLL KQF + + R+++R   +      D     R G+ + KR D +   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE
            +   C  C G GH  +EC T+L++ RKG S    D ESE   D++ +V AL+         F T +D S +  E   +++   ++    +  K+++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE

Query:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        Q+   K+ I++L  +     + IS++K E+    ++ + M+KS++MLN
Subjt:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

Q84VI4 Gag-pol polyprotein1.0e-9245.76Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+GSNY YWKARM AFLKSL  RTWKA+I GW HP + + EG   + LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DAW+IL I HEGT+KVK+SRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  M 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++VLL KQF + + R+++R   +      D     R G+ + K+ D +   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE
            +   C  C G GH  +EC T+L++ RKG S    D ESE   D++ +V AL       T  F T +D S +  E   +++   ++    +  K+++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD-ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQ----EDLKVIE

Query:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        Q+   K+ I++L  +     + IS++K E+    ++ + M+KS++MLN
Subjt:  QQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

V9H042 Gag-protease polyprotein1.2e-9346.1Show/hide
Query:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN
        M   +EGG   RPP+L+G+NY YWKARM AFLKSL  RTWKA+I  W HP + + EG   + LKPE+DW   E+E AL NS+ALNALFNGVD+NIFRLIN
Subjt:  METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEG--VESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLIN

Query:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS
        TCT A DAW+IL   HEGT+KVKMSRLQ+L+++FENLKM+E+E I ++H  I +IAN   +LGE+ +DEKL RK+LRSLPKRF MKVTAIEEA DI  + 
Subjt:  TCTSAADAWKILAIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMS

Query:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV
        VDELIGSL TFEL L + ++ K K +A  S    E+       ++G T+++VLL KQF + + R++RR   +     R+     R G+ + KR DE+   
Subjt:  VDELIGSLLTFELSLEENSDSKGKGIALQSVST-EDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYV

Query:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD--ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQE----DLKVI
            + F C  C G GH ++EC T+L++QRKG S    D  ESE   D++ +V AL       T  F + +D S +  E   +++   ++E      K++
Subjt:  FKKDEDFICRECGGKGHYQSECATYLRRQRKGFSATLFD--ESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQE----DLKVI

Query:  EQQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN
        +Q+   K+ I+ L  +     + IS++K E+    ++ + M+KS++MLN
Subjt:  EQQ---KERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACTATCAGGGAAGGAGGTTCGACCACCAGACCACCGGTTCTGAATGGATCAAACTACGCTTATTGGAAAGCTAGAATGACTGCCTTCCTCAAATCATTAGGCCA
CAGAACATGGAAAGCCATCATCATGGGATGGACTCATCCAACAATCACTAATGCTGAAGGAGTAGAAAGTCTGAAACCAGAAAAAGATTGGAATGATACAGAAGAAGAAG
CTGCATTGGATAATTCCCGAGCCTTAAATGCCTTATTCAATGGTGTAGATCAGAACATTTTCAGACTTATCAACACCTGCACGTCTGCAGCTGATGCTTGGAAAATCTTA
GCTATAGCTCATGAAGGAACTACAAAGGTAAAAATGTCTCGTCTTCAAATGTTATCTTCCAGATTTGAAAATCTTAAAATGCAGGAAGATGAAACAATTTCTGAATATCA
TGCAAAGATCCGTGACATTGCTAATGAATCTTTTTCTTTGGGAGAAAAATTTTCTGATGAAAAATTATTCCGAAAGGTATTAAGATCTCTTCCTAAAAGGTTTAGTATGA
AAGTTACTGCTATAGAAGAAGCAAATGATATTTCTATTATGAGTGTAGACGAATTGATTGGATCTTTACTAACTTTTGAATTGAGTCTTGAAGAAAATTCTGATTCTAAA
GGGAAAGGCATAGCTCTTCAAAGCGTTAGTACAGAAGATCCCTCTGCAGGAAAAATTAAAGAAGATGGATATACTGACTCGTTGGTTTTGTTAACCAAACAATTTACTCG
TGCGGTGAAAAGATTAAACAGAAGGCCTATGAACTATGGATCCACTTCAAATCGGGACAATCAAAATAAATTTAGAAATGGTAACTCCTTTCCAAAAAGAAAAGATGAAA
GGAATTATGTTTTTAAAAAGGATGAAGATTTCATATGCAGAGAATGTGGTGGTAAAGGACATTACCAATCAGAATGTGCTACCTATTTGAGAAGACAACGCAAAGGATTC
TCAGCAACTCTGTTTGATGAGTCAGAATCAAGTCATGATACTGAGGATGAGGTACGTGCACTAGTTGCTGCTTCTAAGTTTCAAACTGATAATTTTTCAACAGGAGATGA
TCAATCCTCTAGTCCTCCTGAAAGAGATCTTGAAGATATGATGGAGAAATGGCAGGAAGATCTCAAAGTTATTGAACAGCAGAAAGAAAGAATTTCAGAACTAGTTGAAG
ACAACCATAGACTGTTGCAAACTATCTCAGACATCAAAAAGGAGTTGAGAAATGCAAAAAATGAAAATGATAGAATGTCAAAGTCTGTTCGCATGCTGAATTCAGAAATC
ATATCATCATGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAACAATATAACCCGACAACCCAACCCAATCCATATTTTAAGGGTTGGGTTATGAATATAATTCGGGTAATTTGGGTTGTCATCCCTGAGTTGGGTTGAAAAGGT
TCCTCAACCCAACCCACACACCTAACTTTTGGGATAATAGAGTTTTGATTAAAGGTTGGAGATTGGACTTCCAAGATTTGGATTGAGGAGGTCTAGCCATTAATTGGATC
AAAAAGTACAAAATTGGTTGAAAAGTTAATAATAACTAGAAAAATTAAGAGATGTATACGATAAAAGATTTTTTGTTTAAAGTTTAAGATTGGACACAAATAGAAATGGA
CGACAAATAAAGGTACTTCTAAGACTTATAGAGGATTTGTTCAAGTGATTGGCATTAAACACAAATTTACAAATTTGTTGTTAATGAGTTATGTATTCCATGATAAAACC
AATTAAATAACGACAATTGATTTTGGATTAAAGTGTGTGATTGGACTTCAACTTCTTAGTTGAAGAAGTATGGTCGTTCTATGGATTAAAAAGATAAAGTTTGATTGAAG
AGATTGGAAAATGAACAAATAAGAGACTAATTTTGGTTAATGGTTGTAGATTCAACTCAACATTTAGATTTAACAAGCTTAGCCATTCTTTGGAAAATGGACAAATTAAG
ATACTTGTAATTTGGAAAATGGACAAATTAAGATACTTGTAAGAGAGTTATAGAGGATTTGTTCAAGTGTCATACATTGGAACATAACGTTAGAGATTATATATTGGAAA
AGGAAGAACACAAATTTGTTTTTTACAGGTTATGTATTCCATGATGAATGCAAATAAGAAGCGACGAGAATTTTGGATTATAAAGTATGTGATTAGAATTCAATTTTTTA
TGGAAGAGGTCTAGCCGTTTTATGGATTAAAAATCTAAAGTTCTGTTATTCCATGTTGTCATTGACTTTTATGCCCCTCTTTTATTGTTATGATTCCTTGACTTTCTCTT
TGTTTTTTAATTAAAAATGTTTACCTTATTGGTCTCTTTGTTTTTATCTCCTTATTGATTATTGTAATCTTACTATTTTGTTGCCTTATTATTTCTTCTAATTATGCCTT
TAATTGTGTTATTATTGAAGCTAATTTCTAGCTAAATATCTTTGCCTTATTTGTTTACTTCTTTCCTTCTTTGCTTCCTCCTCATCCTTATTTAATTGCTGTTGTATTGT
TTTGAAAGTGTGCAGATTGTATTTTTCATACATTGAGTTTATTATACTGATCAAATAACCTGCAATTGTGATATTTTCTTAATTTGTATTCTGTGCCTCATACTGTTGAT
CCTTGTATTACGACATCTTGTTCGTCATTACGTGAATAAGAAGAATTCAAGTATTTAGGGGGAGCCTAAATATCTCATAATTCTAGAGTGTTGAAGTCAGGGGGAGCCTG
ATCTTATTGAGGAAAGTAAATCAAGAATCAACTACTTAGGAAGTGCCTAAGTGTTCGAGGACGACTCTTGGTGTAAACAAGATCGATGCATTTGCGATAAGTTGTTTTCT
TGTATTTCTTTTTACATTCTAGTGAATATTCTTCTTATTGAGCCTTGCCCCCCAGACGTAGGTGTGTTCACCGAACTGGGTTACCAACTCCGTGCGTTCATTTTATCTCT
TAACCCTTCTTTTACTTTCAGCTAGTTTTATGCTTATGTTATAACATTTCAACCAACATACTGCACTTTATCTAACGATCATGTATTAACAAGTGGTATCAGAGCGGGTT
CTTTTCAGTACAGTATGGAAACTATCAGGGAAGGAGGTTCGACCACCAGACCACCGGTTCTGAATGGATCAAACTACGCTTATTGGAAAGCTAGAATGACTGCCTTCCTC
AAATCATTAGGCCACAGAACATGGAAAGCCATCATCATGGGATGGACTCATCCAACAATCACTAATGCTGAAGGAGTAGAAAGTCTGAAACCAGAAAAAGATTGGAATGA
TACAGAAGAAGAAGCTGCATTGGATAATTCCCGAGCCTTAAATGCCTTATTCAATGGTGTAGATCAGAACATTTTCAGACTTATCAACACCTGCACGTCTGCAGCTGATG
CTTGGAAAATCTTAGCTATAGCTCATGAAGGAACTACAAAGGTAAAAATGTCTCGTCTTCAAATGTTATCTTCCAGATTTGAAAATCTTAAAATGCAGGAAGATGAAACA
ATTTCTGAATATCATGCAAAGATCCGTGACATTGCTAATGAATCTTTTTCTTTGGGAGAAAAATTTTCTGATGAAAAATTATTCCGAAAGGTATTAAGATCTCTTCCTAA
AAGGTTTAGTATGAAAGTTACTGCTATAGAAGAAGCAAATGATATTTCTATTATGAGTGTAGACGAATTGATTGGATCTTTACTAACTTTTGAATTGAGTCTTGAAGAAA
ATTCTGATTCTAAAGGGAAAGGCATAGCTCTTCAAAGCGTTAGTACAGAAGATCCCTCTGCAGGAAAAATTAAAGAAGATGGATATACTGACTCGTTGGTTTTGTTAACC
AAACAATTTACTCGTGCGGTGAAAAGATTAAACAGAAGGCCTATGAACTATGGATCCACTTCAAATCGGGACAATCAAAATAAATTTAGAAATGGTAACTCCTTTCCAAA
AAGAAAAGATGAAAGGAATTATGTTTTTAAAAAGGATGAAGATTTCATATGCAGAGAATGTGGTGGTAAAGGACATTACCAATCAGAATGTGCTACCTATTTGAGAAGAC
AACGCAAAGGATTCTCAGCAACTCTGTTTGATGAGTCAGAATCAAGTCATGATACTGAGGATGAGGTACGTGCACTAGTTGCTGCTTCTAAGTTTCAAACTGATAATTTT
TCAACAGGAGATGATCAATCCTCTAGTCCTCCTGAAAGAGATCTTGAAGATATGATGGAGAAATGGCAGGAAGATCTCAAAGTTATTGAACAGCAGAAAGAAAGAATTTC
AGAACTAGTTGAAGACAACCATAGACTGTTGCAAACTATCTCAGACATCAAAAAGGAGTTGAGAAATGCAAAAAATGAAAATGATAGAATGTCAAAGTCTGTTCGCATGC
TGAATTCAGAAATCATATCATCATGA
Protein sequenceShow/hide protein sequence
METIREGGSTTRPPVLNGSNYAYWKARMTAFLKSLGHRTWKAIIMGWTHPTITNAEGVESLKPEKDWNDTEEEAALDNSRALNALFNGVDQNIFRLINTCTSAADAWKIL
AIAHEGTTKVKMSRLQMLSSRFENLKMQEDETISEYHAKIRDIANESFSLGEKFSDEKLFRKVLRSLPKRFSMKVTAIEEANDISIMSVDELIGSLLTFELSLEENSDSK
GKGIALQSVSTEDPSAGKIKEDGYTDSLVLLTKQFTRAVKRLNRRPMNYGSTSNRDNQNKFRNGNSFPKRKDERNYVFKKDEDFICRECGGKGHYQSECATYLRRQRKGF
SATLFDESESSHDTEDEVRALVAASKFQTDNFSTGDDQSSSPPERDLEDMMEKWQEDLKVIEQQKERISELVEDNHRLLQTISDIKKELRNAKNENDRMSKSVRMLNSEI
ISS