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PI0021349 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021349
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRNase H domain-containing protein
Genome locationchr01:13374341..13374973
RNA-Seq ExpressionPI0021349
SyntenyPI0021349
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ37402.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]5.8e-0829.38Show/hide
Query:  WSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYGIY
        W RPP    KL  D     N   + +G VIR ++ E++ A AV   + +     E L    GL     LG++++ VE DA+ II  +       +  G  
Subjt:  WSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYGIY

Query:  YAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEADNE
           V  LL   + +   H+ +  N + H +   AL S  S       PPWL++L EA N+
Subjt:  YAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEADNE

TXG71894.1 hypothetical protein EZV62_000473 [Acer yangbiense]5.8e-0826.9Show/hide
Query:  NSTQWVEVIESESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRV
        N++  +  +  ++W  P   ++K+ VDA     ++  SVG+VIR     I+ + A++ +   +T +AE  V   GL L    GL+ + +ESD++ +++  
Subjt:  NSTQWVEVIESESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRV

Query:  LSLNFTHSPYGIYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEAD
             T +       ++  LL R +   +++I R CN + H V   A+    S +    YP WL KL  +D
Subjt:  LSLNFTHSPYGIYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEAD

XP_023907861.1 uncharacterized protein LOC112019574 [Quercus suber]8.9e-0929.63Show/hide
Query:  ESESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRV----LSLNF
        ++ SW+ PP    K+ VD     +   +++G++I      +MAA   LL +    +  E +    G+ L  E+ +  + +E DA+ I++ +    L   F
Subjt:  ESESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRV----LSLNF

Query:  THSPYGIYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKL
         H  +GI  +     L       L H+ RDCN   HN+ A+A SS TS +WI   PP L  L
Subjt:  THSPYGIYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKL

XP_023926797.1 uncharacterized protein LOC112038229 [Quercus suber]5.8e-0829.75Show/hide
Query:  WSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYGIY
        WS PP    K+ VD +    ++++S+G+VIR    + +AA    L S    ++ E L    G+ L  EL L  V  ESDA+ +I  +    F  +PYG  
Subjt:  WSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYGIY

Query:  YAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEAD
          ++ H         L H++R  NS  H +  +A  + +  LW    P +L  L + D
Subjt:  YAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEAD

XP_031122570.1 uncharacterized protein LOC116025477 [Ipomoea triloba]1.7e-0730.52Show/hide
Query:  ESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYG
        ++W++P    LKL VDA+   + +   +G +IR D    +AAQ+V+     + + AE L     L+ +   G   V VE+DA L+I  +   N   SP+G
Subjt:  ESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYG

Query:  IYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLN
        +   ++  LL     +   HI R  NS+ H +  YA S  TS  W    P +++
Subjt:  IYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLN

TrEMBL top hitse value%identityAlignment
A0A2P5BPF4 Ribonuclease H1.1e-0730.94Show/hide
Query:  LKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAET-LVGLNLI--DELGLKDVWVESDAILIIKRVLSLNFTHSPYGIYYAEVIHLLGR
        + VDA    +     VG +IR    E+MAA A  +D   ++KV ET  +GL+L+   ++GL    VESDA+ +++ + + +  +S +G    +V  LL  
Subjt:  LKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAET-LVGLNLI--DELGLKDVWVESDAILIIKRVLSLNFTHSPYGIYYAEVIHLLGR

Query:  LKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPP
           + + H+ RD N + H +  YAL      +W+   PP
Subjt:  LKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPP

A0A5B6YN15 RNase H domain-containing protein (Fragment)6.2e-0829.22Show/hide
Query:  VIESESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAET---LVGLNLIDELGLKDVWVESDAILIIKRVLSLNFTH
        ++ + +WS PP+   KL VDA+ IP +    VG VIR    +++A  A  +D   +   AE    L GL    E+G+ D+ VE D + +I  + S +   
Subjt:  VIESESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAET---LVGLNLIDELGLKDVWVESDAILIIKRVLSLNFTH

Query:  SPYGIYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYP
        S  G    +V   +  L++    H+ R+ N + HN+ A A       +W+   P
Subjt:  SPYGIYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYP

A0A5C7I124 CCHC-type domain-containing protein4.0e-0727.94Show/hide
Query:  SWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYGI
        +W  P     K+  DA    N     +G+VIR +   ++A+ +++L +G    +AET+    GL    + GL    +ESDA +++KR+   +   S  G+
Subjt:  SWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYGI

Query:  YYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYAL
          AE+  L+  L ++ ++H+ R  N++ H +  +AL
Subjt:  YYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYAL

A0A5C7IFK3 RNase H domain-containing protein3.1e-0726.25Show/hide
Query:  ESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYG
        ++WS P   ++K+ VDA     ++  S G+VIR     I+ A A++     +  +AE      G+ L    GL+ + +ESD++ +++       T +   
Subjt:  ESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRVLSLNFTHSPYG

Query:  IYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEAD
            ++  LL R + + +++I R CN + H V   A+    S +    YP WL K+  +D
Subjt:  IYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEAD

A0A5C7IST2 RNase H domain-containing protein2.8e-0826.9Show/hide
Query:  NSTQWVEVIESESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRV
        N++  +  +  ++W  P   ++K+ VDA     ++  SVG+VIR     I+ + A++ +   +T +AE  V   GL L    GL+ + +ESD++ +++  
Subjt:  NSTQWVEVIESESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLV---GLNLIDELGLKDVWVESDAILIIKRV

Query:  LSLNFTHSPYGIYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEAD
             T +       ++  LL R +   +++I R CN + H V   A+    S +    YP WL KL  +D
Subjt:  LSLNFTHSPYGIYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTAAAAGTTGAATGGATCTCAAAGTTTTACGGGGATATCCGACGAACTGGTATGATAGACAGACAACAAGTGGGTATAAGCTCCTTTTCTTCTTGGATCAGTAA
TAGTACTCAGTGGGTCGAGGTGATTGAAAGTGAAAGCTGGAGTCGACCACCTCAGAGTTCTTTGAAGCTGAAAGTTGATGCCACGAAAATCCCTAATAAAGATTGGACTA
GTGTAGGCTTGGTGATTCGAGGTGACGTTTGTGAAATCATGGCTGCCCAGGCAGTGCTGTTGGACAGTGGGATTGCGACTAAAGTTGCTGAAACCCTTGTGGGTTTGAAC
TTGATTGATGAGTTAGGTTTGAAGGATGTTTGGGTGGAATCTGATGCCATTTTAATTATCAAGAGGGTTCTCTCATTAAATTTTACTCACTCACCTTATGGAATTTACTA
CGCTGAAGTGATCCATTTACTTGGTAGATTGAAGATATTGGGCCTTGCTCATATATCCAGGGATTGTAACAGCATAACCCATAATGTGGTTGCCTATGCTTTAAGCTCCT
TTACTTCTAGTTTATGGATCCATTTTTATCCTCCTTGGTTAAACAAACTAAATGAGGCTGATAATGAGTTTGTGTACCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGTAAAAGTTGAATGGATCTCAAAGTTTTACGGGGATATCCGACGAACTGGTATGATAGACAGACAACAAGTGGGTATAAGCTCCTTTTCTTCTTGGATCAGTAA
TAGTACTCAGTGGGTCGAGGTGATTGAAAGTGAAAGCTGGAGTCGACCACCTCAGAGTTCTTTGAAGCTGAAAGTTGATGCCACGAAAATCCCTAATAAAGATTGGACTA
GTGTAGGCTTGGTGATTCGAGGTGACGTTTGTGAAATCATGGCTGCCCAGGCAGTGCTGTTGGACAGTGGGATTGCGACTAAAGTTGCTGAAACCCTTGTGGGTTTGAAC
TTGATTGATGAGTTAGGTTTGAAGGATGTTTGGGTGGAATCTGATGCCATTTTAATTATCAAGAGGGTTCTCTCATTAAATTTTACTCACTCACCTTATGGAATTTACTA
CGCTGAAGTGATCCATTTACTTGGTAGATTGAAGATATTGGGCCTTGCTCATATATCCAGGGATTGTAACAGCATAACCCATAATGTGGTTGCCTATGCTTTAAGCTCCT
TTACTTCTAGTTTATGGATCCATTTTTATCCTCCTTGGTTAAACAAACTAAATGAGGCTGATAATGAGTTTGTGTACCTTTGA
Protein sequenceShow/hide protein sequence
MNVKVEWISKFYGDIRRTGMIDRQQVGISSFSSWISNSTQWVEVIESESWSRPPQSSLKLKVDATKIPNKDWTSVGLVIRGDVCEIMAAQAVLLDSGIATKVAETLVGLN
LIDELGLKDVWVESDAILIIKRVLSLNFTHSPYGIYYAEVIHLLGRLKILGLAHISRDCNSITHNVVAYALSSFTSSLWIHFYPPWLNKLNEADNEFVYL