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PI0021356 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021356
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionHIG1 domain-containing protein
Genome locationchr12:2341239..2341960
RNA-Seq ExpressionPI0021356
SyntenyPI0021356
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152465.1 RING-H2 finger protein ATL48 [Cucumis sativus]1.5e-3698.78Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_008438139.1 PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo]2.0e-3698.78Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_022954948.1 RING-H2 finger protein ATL48-like [Cucurbita moschata]5.3e-3492.68Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_023541211.1 RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]5.3e-3492.68Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTAFYYG+NPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

XP_038895243.1 RING-H2 finger protein ATL48-like [Benincasa hispida]2.2e-3595.12Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS+EPNLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein7.3e-3798.78Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTA+YYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A1S3AVM7 RING-H2 finger protein ATL489.5e-3798.78Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A5A7UHA1 RING-H2 finger protein ATL489.5e-3798.78Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGTAFYYGENPWRSS
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like2.6e-3492.68Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

A0A6J1K3J5 RING-H2 finger protein ATL48-like7.5e-3492.68Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS
        MSS E NLDEFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR S
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B2.0e-0744.29Show/hide
Query:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATV-ALMVGTA
        S+     E F+ K R  NP+VPIG L TA VLT GL  F +GNSQ  +++M  ++  QG T+ A+++G A
Subjt:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial2.6e-0746.55Show/hide
Query:  PLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENP
        PLVP+G LAT G L     + R GN +    +  ARV  QG TVA ++G A YYG++P
Subjt:  PLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENP

Q7X843 RING-H2 finger protein ATL482.0e-3181.25Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GAL TAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGT +YYG+NPW+
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR

Q9BW72 HIG1 domain family member 2A, mitochondrial1.9e-1058.73Show/hide
Query:  EFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATV-ALMVGTA
        E FV K R  NP+VPIG LATA  LT GL SF RGNSQ  Q++MR R+  QG TV A+++G A
Subjt:  EFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A3.1e-0847.14Show/hide
Query:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGAT-VALMVGTA
        S+     E F+ K R  NP+VPIG L TA  LT GL  F RG S   Q++MR R+  QG T VA+++G A
Subjt:  SDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein1.4e-3281.25Show/hide
Query:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR
        MSS EP++++ F EKKR RNPLVP+GAL TAGVLTAGLISFRRGNSQLGQ+LMRARVVVQGATVALMVGT +YYG+NPW+
Subjt:  MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCGACGAACCCAATTTGGACGAGTTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTTGTCCCCATCGGTGCACTTGCCACTGCTGGGGTTCTCACTGCTGG
ATTAATAAGCTTTAGACGAGGCAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTTTACT
ATGGAGAGAATCCTTGGCGGTCGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCCGACGAACCCAATTTGGACGAGTTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTTGTCCCCATCGGTGCACTTGCCACTGCTGGGGTTCTCACTGCTGG
ATTAATAAGCTTTAGACGAGGCAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTTTACT
ATGGAGAGAATCCTTGGCGGTCGAGTTAA
Protein sequenceShow/hide protein sequence
MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRSS