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PI0021410 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021410
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationchr07:191858..193125
RNA-Seq ExpressionPI0021410
SyntenyPI0021410
Gene Ontology termsGO:0045488 - pectin metabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0008168 - methyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR044689 - Pectin methyltransferase CGR2/3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649381.1 hypothetical protein Csa_011838 [Cucumis sativus]1.1e-5990Show/hide
Query:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTL
        GHT CTSEVQTTIPLLREVYDD MTKVLYVGPDTCSM+SKLLI DEDDYEAWGVEPY  DSS F+CWDLIHKGIIRVAD+KF LPY +NSFSHVIISDTL
Subjt:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTL

Query:  EYFSSRYLNSTIFELMRVSREGVIIFAGKP
        EYFSSRYLNSTIFELMRVSREGVIIFAG P
Subjt:  EYFSSRYLNSTIFELMRVSREGVIIFAGKP

TYK29433.1 uncharacterized protein E5676_scaffold655G00250 [Cucumis melo var. makuwa]1.5e-6493.94Show/hide
Query:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISD
        MAGHT CTSEVQTTIPLLREVYDD+MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYGSDSS FNCWDLIHKGIIRVAD+KFALPYGENSFSHVIISD
Subjt:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISD

Query:  TLEYFSSRYLNSTIFELMRVSREGVIIFAGKP
        TLEYFSSRYLNSTIFELMRVSREGVIIFAG P
Subjt:  TLEYFSSRYLNSTIFELMRVSREGVIIFAGKP

XP_008454502.1 PREDICTED: uncharacterized protein At3g49720-like [Cucumis melo]1.7e-6393.85Show/hide
Query:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTL
        GHT CTSEVQTTIPLLREVYDD+MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYGSDSS FNCWDLIHKGIIRVAD+KFALPYGENSFSHVIISDTL
Subjt:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTL

Query:  EYFSSRYLNSTIFELMRVSREGVIIFAGKP
        EYFSSRYLNSTIFELMRVSREGVIIFAG P
Subjt:  EYFSSRYLNSTIFELMRVSREGVIIFAGKP

XP_011654354.1 probable pectin methylesterase CGR3 [Cucumis sativus]1.1e-5990Show/hide
Query:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTL
        GHT CTSEVQTTIPLLREVYDD MTKVLYVGPDTCSM+SKLLI DEDDYEAWGVEPY  DSS F+CWDLIHKGIIRVAD+KF LPY +NSFSHVIISDTL
Subjt:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTL

Query:  EYFSSRYLNSTIFELMRVSREGVIIFAGKP
        EYFSSRYLNSTIFELMRVSREGVIIFAG P
Subjt:  EYFSSRYLNSTIFELMRVSREGVIIFAGKP

XP_038905892.1 probable pectin methylesterase CGR3 [Benincasa hispida]1.4e-5786.05Show/hide
Query:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLE
        G T C+ EVQT IPLLREVYDD+MTKVLYVGPDTCSMMS+LLIDE++YEAWGVEPYGSD SDF CWDLIHKGIIRVAD+KF+LPY ENSFSHVIISDTLE
Subjt:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLE

Query:  YFSSRYLNSTIFELMRVSREGVIIFAGKP
        YFS RYLNSTI ELMRVSR+GVIIFAG P
Subjt:  YFSSRYLNSTIFELMRVSREGVIIFAGKP

TrEMBL top hitse value%identityAlignment
A0A0A0L156 Uncharacterized protein7.1e-7685.23Show/hide
Query:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISD
        MAGHT CTSEVQTTIPLLREVYDD MTKVLYVGPDTCSM+SKLLI DEDDYEAWGVEPY  DSS F+CWDLIHKGIIRVAD+KF LPY +NSFSHVIISD
Subjt:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISD

Query:  TLEYFSSRYLNSTIFELMRVSREGVIIFAGKPLIL-----------VIRIIPFQNLPYTNLTARPNSEVLRGGKGI
        TLEYFSSRYLNSTIFELMRVSREGVIIFAGKPLIL           VIRII FQNLP TNLT RPNSEVLRGGKGI
Subjt:  TLEYFSSRYLNSTIFELMRVSREGVIIFAGKPLIL-----------VIRIIPFQNLPYTNLTARPNSEVLRGGKGI

A0A1S3BYV5 uncharacterized protein At3g49720-like8.2e-6493.85Show/hide
Query:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTL
        GHT CTSEVQTTIPLLREVYDD+MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYGSDSS FNCWDLIHKGIIRVAD+KFALPYGENSFSHVIISDTL
Subjt:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTL

Query:  EYFSSRYLNSTIFELMRVSREGVIIFAGKP
        EYFSSRYLNSTIFELMRVSREGVIIFAG P
Subjt:  EYFSSRYLNSTIFELMRVSREGVIIFAGKP

A0A5A7TLX1 Uncharacterized protein1.8e-5094.39Show/hide
Query:  MTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSREGV
        MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYGSDSS FNCWDLIHKGIIRVAD+KFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSREGV
Subjt:  MTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLNSTIFELMRVSREGV

Query:  IIFAGKP
        IIFAG P
Subjt:  IIFAGKP

A0A5D3E063 Uncharacterized protein7.4e-6593.94Show/hide
Query:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISD
        MAGHT CTSEVQTTIPLLREVYDD+MTKVLYVGPDTCSM+SKLLI DEDDYEAWG+EPYGSDSS FNCWDLIHKGIIRVAD+KFALPYGENSFSHVIISD
Subjt:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLI-DEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISD

Query:  TLEYFSSRYLNSTIFELMRVSREGVIIFAGKP
        TLEYFSSRYLNSTIFELMRVSREGVIIFAG P
Subjt:  TLEYFSSRYLNSTIFELMRVSREGVIIFAGKP

A0A6J1D594 uncharacterized protein At3g49720-like1.0e-4569.77Show/hide
Query:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLE
        GH  CT EV+ T+PLLREVYDD M KVLYVGPDTCS++S  L DE+DYEAWGV+P+G D++D +C DL+ +GI+RVADIKF LPY ++SFSHV++SDTLE
Subjt:  GHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLE

Query:  YFSSRYLNSTIFELMRVSREGVIIFAGKP
        Y SSRYLNST+ EL RVS EGVII+AG P
Subjt:  YFSSRYLNSTIFELMRVSREGVIIFAGKP

SwissProt top hitse value%identityAlignment
Q0WPN7 Probable pectin methylesterase CGR32.0e-3856.49Show/hide
Query:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT
        + G   CT+EVQ  IP+L+  Y D+M KVL+VGP+TCS++S LL +E++ EAWGVEPY  + +D NC  L+HKG++RVADIKF LPY   SFS VI+SD 
Subjt:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT

Query:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP
        L+Y S RYLN T+ EL RV+ +GV++ AG P
Subjt:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP

Q9M2Y6 Probable pectin methylesterase CGR21.4e-3654.96Show/hide
Query:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT
        + G   CT+EVQ  IP+L++ Y D M KVL+VGPDTCS++S LL  E++ EAWGVEPY  + +D +C   + KG++RVADIKF LPY   SFS VI+SD 
Subjt:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT

Query:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP
        L+Y S +YLN T+ EL RV+ +GV++FAG P
Subjt:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP

Arabidopsis top hitse value%identityAlignment
AT3G49720.1 unknown protein9.9e-3854.96Show/hide
Query:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT
        + G   CT+EVQ  IP+L++ Y D M KVL+VGPDTCS++S LL  E++ EAWGVEPY  + +D +C   + KG++RVADIKF LPY   SFS VI+SD 
Subjt:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT

Query:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP
        L+Y S +YLN T+ EL RV+ +GV++FAG P
Subjt:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP

AT3G49720.2 unknown protein9.9e-3854.96Show/hide
Query:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT
        + G   CT+EVQ  IP+L++ Y D M KVL+VGPDTCS++S LL  E++ EAWGVEPY  + +D +C   + KG++RVADIKF LPY   SFS VI+SD 
Subjt:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT

Query:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP
        L+Y S +YLN T+ EL RV+ +GV++FAG P
Subjt:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP

AT5G65810.1 unknown protein1.4e-3956.49Show/hide
Query:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT
        + G   CT+EVQ  IP+L+  Y D+M KVL+VGP+TCS++S LL +E++ EAWGVEPY  + +D NC  L+HKG++RVADIKF LPY   SFS VI+SD 
Subjt:  MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDT

Query:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP
        L+Y S RYLN T+ EL RV+ +GV++ AG P
Subjt:  LEYFSSRYLNSTIFELMRVSREGVIIFAGKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGTCATACCCTTTGCACTTCGGAAGTTCAAACAACAATACCACTTCTAAGGGAAGTATATGATGATAACATGACCAAAGTGTTATATGTTGGCCCTGATACTTG
TTCGATGATGTCCAAATTACTCATAGACGAAGATGATTATGAAGCTTGGGGTGTGGAACCATATGGCTCTGATTCTAGTGACTTCAATTGCTGGGATCTCATCCATAAAG
GCATCATCCGTGTTGCCGATATTAAATTTGCTCTGCCTTATGGGGAAAATTCATTTTCTCATGTTATAATTTCAGATACTTTGGAATATTTCTCTTCACGATACCTTAAC
AGCACAATTTTTGAGTTGATGAGGGTATCTAGAGAGGGTGTTATCATATTTGCTGGTAAACCCCTTATTTTAGTTATCCGGATTATCCCGTTTCAGAATTTACCATATAC
AAATTTAACCGCCAGGCCAAACTCCGAAGTCCTTCGTGGTGGAAAAGGTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGTCATACCCTTTGCACTTCGGAAGTTCAAACAACAATACCACTTCTAAGGGAAGTATATGATGATAACATGACCAAAGTGTTATATGTTGGCCCTGATACTTG
TTCGATGATGTCCAAATTACTCATAGACGAAGATGATTATGAAGCTTGGGGTGTGGAACCATATGGCTCTGATTCTAGTGACTTCAATTGCTGGGATCTCATCCATAAAG
GCATCATCCGTGTTGCCGATATTAAATTTGCTCTGCCTTATGGGGAAAATTCATTTTCTCATGTTATAATTTCAGATACTTTGGAATATTTCTCTTCACGATACCTTAAC
AGCACAATTTTTGAGTTGATGAGGGTATCTAGAGAGGGTGTTATCATATTTGCTGGTAAACCCCTTATTTTAGTTATCCGGATTATCCCGTTTCAGAATTTACCATATAC
AAATTTAACCGCCAGGCCAAACTCCGAAGTCCTTCGTGGTGGAAAAGGTATTTAA
Protein sequenceShow/hide protein sequence
MAGHTLCTSEVQTTIPLLREVYDDNMTKVLYVGPDTCSMMSKLLIDEDDYEAWGVEPYGSDSSDFNCWDLIHKGIIRVADIKFALPYGENSFSHVIISDTLEYFSSRYLN
STIFELMRVSREGVIIFAGKPLILVIRIIPFQNLPYTNLTARPNSEVLRGGKGI