CuGenDBv2

Gene ID	PI0021477
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome location	chr12:18715803..18716758
RNA-Seq Expression	PI0021477
Synteny	PI0021477
Gene Ontology terms	GO:0048507 - meristem development (biological process)
InterPro domains	IPR019557 - Aminotransferase-like, plant mobile domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036767.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]

1.1e-76

57.2

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Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-----------------------------------
        ++SLP+FCTNGH+IW+TI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEPLLHNI+LR  DW                                   
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-----------------------------------

Query:  -----------------------LNNSRLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETG
                                NN RLR+V DDPQQVL+ICN+NE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH +EVPPM QTQSE  
Subjt:  -----------------------LNNSRLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETG

Query:  DVSPMMMMPTFGTGYYDSGVGQSLDFGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
         VSP+MMMPTFGT YYDSGVGQS DFG  YY S+AG SS++FGQ+YYDLG++  SSYMHGHGRG
Subjt:  DVSPMMMMPTFGTGYYDSGVGQSLDFGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

KAA0051233.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

1.2e-78

64.02

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Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS
        ++SLP+FCTNGHDIWQTI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEP LHNI+LR  DW                                NN 
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS

Query:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPM--RQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLD
        RLR+V DDPQQVL+ICN+NE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH EEVPPM   QTQSE   VSP+MMMPTFGT YYDSGVGQS D
Subjt:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPM--RQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLD

Query:  FGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
        FG  YY SEAG SS++FGQ+YYDLG++  SSYMH HGRG
Subjt:  FGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

KAA0055624.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]

6.1e-80

64.14

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Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS
        ++SLP+FCTNGH+IW+TI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEPLLHNI+LR  DW                                NN 
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS

Query:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLDFG
        RL +V DDPQQVL+ICNNNE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH EEVPPM QT+SE   VSP+MMMPTFGT YYDSGVGQS DFG
Subjt:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLDFG

Query:  TEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
          YY SEAG SS++FGQ+YYDLG++  SSYMHGHGRG
Subjt:  TEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

KAA0067080.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

1.1e-76

57.58

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Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-----------------------------------
        ++SLP+FCTNGH+IW+TI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEPLLHNI+LR  DW                                   
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-----------------------------------

Query:  -----------------------LNNSRLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETG
                                NN RLR+V DDPQQVL+ICN+NE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH EEVPPM QTQSE  
Subjt:  -----------------------LNNSRLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETG

Query:  DVSPMMMMPTFGTGYYDSGVGQSLDFGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
         VSP+MMMPTFGT YYDS VGQS DFG  YY SEAG SS++FGQ+YYDLG++  SSYMHGHGRG
Subjt:  DVSPMMMMPTFGTGYYDSGVGQSLDFGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

TYK18891.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]

5.2e-79

64.02

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Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS
        ++SLP+FCTNGHDIW+TI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEP LHNI+LR  DW                                NN 
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS

Query:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPM--RQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLD
        RLR+V DDPQQVL+ICN+NE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH EEVPPM   QTQSE   VSP+MMMPTFGT YYDSGVGQS D
Subjt:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPM--RQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLD

Query:  FGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
        FG  YY SEAG SS++FGQ+YYDLG++  SSYMHGHGRG
Subjt:  FGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U5S8 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

5.6e-79

64.02

Show/hide

Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS
        ++SLP+FCTNGHDIWQTI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEP LHNI+LR  DW                                NN 
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS

Query:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPM--RQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLD
        RLR+V DDPQQVL+ICN+NE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH EEVPPM   QTQSE   VSP+MMMPTFGT YYDSGVGQS D
Subjt:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPM--RQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLD

Query:  FGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
        FG  YY SEAG SS++FGQ+YYDLG++  SSYMH HGRG
Subjt:  FGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

A0A5A7UKC7 Serine/threonine-protein phosphatase 7 long form-like protein

3.0e-80

64.14

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Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS
        ++SLP+FCTNGH+IW+TI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEPLLHNI+LR  DW                                NN 
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS

Query:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLDFG
        RL +V DDPQQVL+ICNNNE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH EEVPPM QT+SE   VSP+MMMPTFGT YYDSGVGQS DFG
Subjt:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLDFG

Query:  TEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
          YY SEAG SS++FGQ+YYDLG++  SSYMHGHGRG
Subjt:  TEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

A0A5A7VIP6 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

5.3e-77

57.58

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Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-----------------------------------
        ++SLP+FCTNGH+IW+TI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEPLLHNI+LR  DW                                   
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-----------------------------------

Query:  -----------------------LNNSRLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETG
                                NN RLR+V DDPQQVL+ICN+NE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH EEVPPM QTQSE  
Subjt:  -----------------------LNNSRLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETG

Query:  DVSPMMMMPTFGTGYYDSGVGQSLDFGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
         VSP+MMMPTFGT YYDS VGQS DFG  YY SEAG SS++FGQ+YYDLG++  SSYMHGHGRG
Subjt:  DVSPMMMMPTFGTGYYDSGVGQSLDFGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein

5.3e-77

57.2

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Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-----------------------------------
        ++SLP+FCTNGH+IW+TI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEPLLHNI+LR  DW                                   
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-----------------------------------

Query:  -----------------------LNNSRLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETG
                                NN RLR+V DDPQQVL+ICN+NE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH +EVPPM QTQSE  
Subjt:  -----------------------LNNSRLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPMRQTQSETG

Query:  DVSPMMMMPTFGTGYYDSGVGQSLDFGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
         VSP+MMMPTFGT YYDSGVGQS DFG  YY S+AG SS++FGQ+YYDLG++  SSYMHGHGRG
Subjt:  DVSPMMMMPTFGTGYYDSGVGQSLDFGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

A0A5D3D5R5 Mediator of RNA polymerase II transcription subunit 12-like isoform X1

2.5e-79

64.02

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Query:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS
        ++SLP+FCTNGHDIW+TI+PLICF+IGEW+HPDR LRQFG +Q VP DCNTEP LHNI+LR  DW                                NN 
Subjt:  MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDW-------------------------------LNNS

Query:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPM--RQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLD
        RLR+V DDPQQVL+ICN+NE+YM+NIHYMYDVPIVPAP+QRR     +P++LEEV+QH EEVPPM   QTQSE   VSP+MMMPTFGT YYDSGVGQS D
Subjt:  RLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQRR-----QPNELEEVEQHVEEVPPM--RQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLD

Query:  FGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG
        FG  YY SEAG SS++FGQ+YYDLG++  SSYMHGHGRG
Subjt:  FGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRG

SwissProt top hits

e value

%identity

Alignment

Q9LNG5 Serine/threonine-protein phosphatase 7 long form homolog

1.1e-12

33.87

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Query:  LPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELR---MTDW---------LNNSRLRDVVDDPQQVLDICNNNERY
        +P  C +G +IW+T+ PLICF + EW+ PDR LRQFG  Q +P  C+ E  LH I+ R     DW         L  +R+  VV    +   + + N+ Y
Subjt:  LPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELR---MTDW---------LNNSRLRDVVDDPQQVLDICNNNERY

Query:  MQNIHYMYDVPIVPAPIQRRQPNE
        M+   Y      + +P+  R+P +
Subjt:  MQNIHYMYDVPIVPAPIQRRQPNE

Arabidopsis top hits

e value

%identity

Alignment

AT1G48120.1 hydrolases;protein serine/threonine phosphatases

8.2e-14

33.87

Show/hide

Query:  LPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELR---MTDW---------LNNSRLRDVVDDPQQVLDICNNNERY
        +P  C +G +IW+T+ PLICF + EW+ PDR LRQFG  Q +P  C+ E  LH I+ R     DW         L  +R+  VV    +   + + N+ Y
Subjt:  LPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELR---MTDW---------LNNSRLRDVVDDPQQVLDICNNNERY

Query:  MQNIHYMYDVPIVPAPIQRRQPNE
        M+   Y      + +P+  R+P +
Subjt:  MQNIHYMYDVPIVPAPIQRRQPNE

Sequences

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CDS sequence

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ATGAATAGTTTGCCGAATTTCTGTACGAACGGTCACGACATATGGCAGACAATTAATCCTCTCATATGTTTTCACATCGGTGAGTGGTATCATCCTGACAGAACACTCAG
ACAGTTTGGTACTAAACAAGATGTTCCAGTTGACTGTAATACTGAACCATTGTTGCATAACATTGAATTGAGAATGACTGATTGGTTGAATAATAGTAGACTTCGGGATG
TTGTAGATGATCCACAACAGGTCCTAGATATATGCAACAATAACGAGCGGTACATGCAGAACATACACTATATGTACGATGTACCTATTGTACCTGCACCAATTCAAAGG
AGACAGCCTAATGAATTGGAAGAAGTTGAACAACACGTGGAAGAAGTGCCTCCTATGAGACAAACACAGAGCGAGACTGGTGATGTTAGTCCAATGATGATGATGCCGAC
ATTTGGAACAGGATATTATGACTCAGGAGTCGGTCAATCGTTAGACTTCGGGACAGAGTATTATAAATCAGAGGCAGGTTCATCATCGTCAAACTTTGGACAAGAATACT
ACGATTTAGGGACAAATTCACCATCTTCATACATGCATGGACATGGACGTGGATGGGAGAACATAACGAATATTTGTACTATGAAGCGTCTGCAGCGGTACTCGAGCAGC
AACAACAAGAGAATTAGGAGGGACTAG

mRNA sequence

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Protein sequence

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MNSLPNFCTNGHDIWQTINPLICFHIGEWYHPDRTLRQFGTKQDVPVDCNTEPLLHNIELRMTDWLNNSRLRDVVDDPQQVLDICNNNERYMQNIHYMYDVPIVPAPIQR
RQPNELEEVEQHVEEVPPMRQTQSETGDVSPMMMMPTFGTGYYDSGVGQSLDFGTEYYKSEAGSSSSNFGQEYYDLGTNSPSSYMHGHGRGWENITNICTMKRLQRYSSS
NNKRIRRD

PI0021477 (gene) of Melon (PI 482460) v1 genome