CuGenDBv2

Gene ID	PI0021494
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Genome location	chr06:12363935..12365044
RNA-Seq Expression	PI0021494
Synteny	PI0021494
Gene Ontology terms	GO:0006515 - protein quality control for misfolded or incompletely synthesized proteins (biological process) GO:0009368 - endopeptidase Clp complex (cellular component) GO:0009526 - plastid envelope (cellular component) GO:0009570 - chloroplast stroma (cellular component) GO:0004176 - ATP-dependent peptidase activity (molecular function) GO:0004252 - serine-type endopeptidase activity (molecular function) GO:0051117 - ATPase binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060718.1 ATP-dependent Clp protease proteolytic subunit 3 [Cucumis melo var. makuwa]

4.1e-29

95.83

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Query:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP
        VIDDGKPGLIAPIAEAT PPKTRVWDLWKVEGSRKAKKNLPSESKI KNGYQGG+GSDEERGSQQETEEPSP
Subjt:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP

XP_008457103.1 PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]

4.1e-29

95.83

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Query:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP
        VIDDGKPGLIAPIAEAT PPKTRVWDLWKVEGSRKAKKNLPSESKI KNGYQGG+GSDEERGSQQETEEPSP
Subjt:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP

XP_011651427.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis sativus]

1.1e-26

90.41

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Query:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGY-QGGQGSDEERGSQQETEEPSP
        VIDDGKPGLIAPIAEAT PPKTR+WDLWKVEGSRKAKKNLPSESKI KNGY +GGQGSD+ERG QQETEEPSP
Subjt:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGY-QGGQGSDEERGSQQETEEPSP

XP_022143418.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Momordica charantia]

6.5e-27

88.89

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Query:  VIDDGKPGLIAPIAE-ATPPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP
        VIDDGKPGLIAPIA+ A PPKTRVWDLWKVEGSRKAKKNLPSE KI +NGYQGGQG+DEERG+QQETEEPSP
Subjt:  VIDDGKPGLIAPIAE-ATPPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP

XP_038902354.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Benincasa hispida]

9.5e-26

88.89

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Query:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP
        VIDDGKPGLIAP AEAT PPKTRVWDLWKVEGSRK KKNLPSE+KI +NGYQ GQGSDEERGSQQETEE SP
Subjt:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LA84 ATP-dependent Clp protease proteolytic subunit

5.4e-27

90.41

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Query:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGY-QGGQGSDEERGSQQETEEPSP
        VIDDGKPGLIAPIAEAT PPKTR+WDLWKVEGSRKAKKNLPSESKI KNGY +GGQGSD+ERG QQETEEPSP
Subjt:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGY-QGGQGSDEERGSQQETEEPSP

A0A1S3C615 ATP-dependent Clp protease proteolytic subunit

2.0e-29

95.83

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Query:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP
        VIDDGKPGLIAPIAEAT PPKTRVWDLWKVEGSRKAKKNLPSESKI KNGYQGG+GSDEERGSQQETEEPSP
Subjt:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP

A0A5A7UZN2 ATP-dependent Clp protease proteolytic subunit

2.0e-29

95.83

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Query:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP
        VIDDGKPGLIAPIAEAT PPKTRVWDLWKVEGSRKAKKNLPSESKI KNGYQGG+GSDEERGSQQETEEPSP
Subjt:  VIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP

A0A6J1CQN6 ATP-dependent Clp protease proteolytic subunit

3.2e-27

88.89

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Query:  VIDDGKPGLIAPIAE-ATPPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP
        VIDDGKPGLIAPIA+ A PPKTRVWDLWKVEGSRKAKKNLPSE KI +NGYQGGQG+DEERG+QQETEEPSP
Subjt:  VIDDGKPGLIAPIAE-ATPPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP

A0A7J7I2Q0 ATP-dependent Clp protease proteolytic subunit

1.2e-23

77.33

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Query:  IRLVIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP
        I  VIDDGKPGLIAP A+AT PPKT+VWDLWK+EGSRKAKKNLPSE KI +NGY+G  GSDEERGS+QE E P+P
Subjt:  IRLVIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSP

SwissProt top hits

e value

%identity

Alignment

Q9SXJ6 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic

1.7e-14

68.52

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Query:  IRLVIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGY
        I  VIDDGKPGLIAPI + T PPKT+VWDLWKVEG++K   NLPSE  + +NGY
Subjt:  IRLVIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGY

Arabidopsis top hits

e value

%identity

Alignment

AT1G66670.1 CLP protease proteolytic subunit 3

1.2e-15

68.52

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Query:  IRLVIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGY
        I  VIDDGKPGLIAPI + T PPKT+VWDLWKVEG++K   NLPSE  + +NGY
Subjt:  IRLVIDDGKPGLIAPIAEAT-PPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGY

Sequences

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CDS sequence

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ATGATACACCAGATCCGGCTCGTTATCGATGATGGGAAGCCTGGACTTATTGCTCCAATTGCAGAGGCAACTCCACCGAAAACCCGAGTCTGGGATTTATGGAAGGTTGA
AGGGAGTCGGAAAGCCAAGAAGAATTTGCCTTCAGAAAGCAAGATTTTTAAAAATGGATATCAAGGGGGTCAAGGAAGTGACGAAGAGCGCGGTAGCCAGCAGGAAACAG
AAGAACCAAGTCCTAATGATGATGTGGCTTATGCTTGA

mRNA sequence

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Protein sequence

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MIHQIRLVIDDGKPGLIAPIAEATPPKTRVWDLWKVEGSRKAKKNLPSESKIFKNGYQGGQGSDEERGSQQETEEPSPNDDVAYA

PI0021494 (gene) of Melon (PI 482460) v1 genome