CuGenDBv2

Gene ID	PI0021507
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	selenoprotein H
Genome location	chr07:19312361..19312971
RNA-Seq Expression	PI0021507
Synteny	PI0021507
Gene Ontology terms	GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0064988.1 selenoprotein H [Cucumis melo var. makuwa]

3.5e-32

67.18

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Query:  GFTSPFMAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCK
        GF SP MAPRKRSKNQE ES  EK    TSR+             D  VT   KSKK K APK+NGKVEE ENKEV+VD GL++ DKDAKS+TVVIEHCK
Subjt:  GFTSPFMAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCK

Query:  QCQSFKKRTIQVQTILENGVSEITVLLNLDK
        QCQSFKKR IQVQT LENGV  ITVLLN DK
Subjt:  QCQSFKKRTIQVQTILENGVSEITVLLNLDK

KAE8652181.1 hypothetical protein Csa_022241 [Cucumis sativus]

2.0e-43

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Query:  GFTSPFMAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCK
        GFTSPFMAPRKR+KNQE +   EK    TSR+             D  VT   KSKK K APK+NGKVEE ENKEV+VD GL +LDKDAKS+TVVIEHCK
Subjt:  GFTSPFMAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCK

Query:  QCQSFKKRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
        QCQSFKKR IQVQT LENGV  ITVLLN DKPRR CFEIRSEDG KFISL
Subjt:  QCQSFKKRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

XP_004138763.1 selenoprotein H [Cucumis sativus]

2.2e-39

68.75

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Query:  MAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFK
        MAPRKR+KNQE +   EK    TSR+             D  VT   KSKK K APK+NGKVEE ENKEV+VD GL +LDKDAKS+TVVIEHCKQCQSFK
Subjt:  MAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFK

Query:  KRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
        KR IQVQT LENGV  ITVLLN DKPRR CFEIRSEDG KFISL
Subjt:  KRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

XP_008445096.1 PREDICTED: selenoprotein H [Cucumis melo]

2.6e-40

70.14

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Query:  MAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFK
        MAPRKRSKNQE ES  EK    TSR+             D  VT   KSKK K APK+NGKVEE ENKEV+VD GL++ DKDAKS+TVVIEHCKQCQSFK
Subjt:  MAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFK

Query:  KRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
        KR IQVQT LENGV  ITVLLN DKPRR CFEIRSEDG KFISL
Subjt:  KRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

XP_038886764.1 selenoprotein H [Benincasa hispida]

6.7e-36

62.84

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Query:  MAPRKRSKNQENESTTEKSTLITSR-----------------IDSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQC
        MAPRKRSKNQE+E   EK    +SR                 +D  VT  +KSKK K APK+NGKV+E EN+ VEVDA L++LDKD K++TVVIEHCKQC
Subjt:  MAPRKRSKNQENESTTEKSTLITSR-----------------IDSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQC

Query:  QSFKKRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
        QSFKKR IQVQ  LENGV  ITV+LN D PRR CFEIRSEDG KFISL
Subjt:  QSFKKRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPC9 Uncharacterized protein

1.1e-39

68.75

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Query:  MAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFK
        MAPRKR+KNQE +   EK    TSR+             D  VT   KSKK K APK+NGKVEE ENKEV+VD GL +LDKDAKS+TVVIEHCKQCQSFK
Subjt:  MAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFK

Query:  KRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
        KR IQVQT LENGV  ITVLLN DKPRR CFEIRSEDG KFISL
Subjt:  KRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

A0A1S3BBW1 selenoprotein H

1.3e-40

70.14

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Query:  MAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFK
        MAPRKRSKNQE ES  EK    TSR+             D  VT   KSKK K APK+NGKVEE ENKEV+VD GL++ DKDAKS+TVVIEHCKQCQSFK
Subjt:  MAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFK

Query:  KRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
        KR IQVQT LENGV  ITVLLN DKPRR CFEIRSEDG KFISL
Subjt:  KRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

A0A5A7VBJ3 Selenoprotein H

1.7e-32

67.18

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Query:  GFTSPFMAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCK
        GF SP MAPRKRSKNQE ES  EK    TSR+             D  VT   KSKK K APK+NGKVEE ENKEV+VD GL++ DKDAKS+TVVIEHCK
Subjt:  GFTSPFMAPRKRSKNQENESTTEKSTLITSRI-------------DSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCK

Query:  QCQSFKKRTIQVQTILENGVSEITVLLNLDK
        QCQSFKKR IQVQT LENGV  ITVLLN DK
Subjt:  QCQSFKKRTIQVQTILENGVSEITVLLNLDK

A0A6J1GHC6 selenoprotein H-like isoform X2

4.3e-28

52.7

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Query:  MAPRKRSKNQENESTTEKSTLITSR-----------------IDSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQC
        MAP+KRSK QE+E+   K    +SR                 ++  V +  K KK K  PK+NGK EE EN+  ++DA  ++L  +AK++ VVIEHCKQC
Subjt:  MAPRKRSKNQENESTTEKSTLITSR-----------------IDSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQC

Query:  QSFKKRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
        QSFKKR ++VQ  LE GV  ITVLLN DKPRR CFEIRSEDG KFISL
Subjt:  QSFKKRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

A0A6J1K9R2 selenoprotein H-like

1.4e-31

57.62

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Query:  MAPRKRSKNQEN-------ESTTEKSTLITSR-------------IDSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHC
        MAPRKRSKNQE+       E     S+++T R             ++  VT   KSKKVK APK+NGK +E  N+  E+DA  K+L KDAK++TVVIE C
Subjt:  MAPRKRSKNQEN-------ESTTEKSTLITSR-------------IDSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHC

Query:  KQCQSFKKRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
        KQCQSFKKR IQVQ+ LENGVS ITVLLN +KPR+ CFEIRS+DG KFISL
Subjt:  KQCQSFKKRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24440.1 selenium binding

1.7e-16

43.7

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Query:  RSKNQENESTTEK--STLITSRIDSNVTRFSKSKKVKH--APKKNGKVEE-----DENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFKKRTIQVQTI
        RS +++  S T++  S+    +I+S   +  K+ K K+  A KK  K EE     ++ +E + DA  KE D D+  K +VIEHCKQC+SFK+R  +V+  
Subjt:  RSKNQENESTTEK--STLITSRIDSNVTRFSKSKKVKH--APKKNGKVEE-----DENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFKKRTIQVQTI

Query:  LENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
        LE  V  I V +N DKPRR CFEIR E G  FISL
Subjt:  LENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

AT4G31360.1 selenium binding

3.1e-15

41.18

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Query:  MAPRKRSKNQEN-----ESTTEKSTLITSRIDSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFKKRTIQVQT
        M  R RS+ Q+N      S T+ +T    R +S +    ++ + K   K+    E +E  E EV+    E++   ++K +VIEHCKQC +FK R IQV+ 
Subjt:  MAPRKRSKNQEN-----ESTTEKSTLITSRIDSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVVIEHCKQCQSFKKRTIQVQT

Query:  ILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL
         LE  V  +TV LN +KPRR CFEIR E G  FISL
Subjt:  ILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

Sequences

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CDS sequence

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ATGACAGAGGTAAAGAGAGATGGTGTTGCGGTTAAGTTTTCGCATGAAAAAGAGAATGAGTGGAGAGGAGGCTGTGTAAAGAGGGGTTTCACTTCTCCTTTCATGGCGCC
CAGGAAGCGAAGCAAGAACCAAGAAAACGAGTCCACGACGGAAAAGTCGACACTGATAACATCCAGGATCGATTCGAATGTCACAAGGTTTTCGAAGAGTAAGAAGGTGA
AACATGCTCCAAAGAAGAATGGGAAGGTTGAGGAGGATGAAAATAAGGAAGTGGAAGTTGATGCTGGTTTGAAGGAACTTGACAAGGATGCGAAGAGTAAAACCGTTGTG
ATTGAACATTGCAAACAGTGCCAATCATTCAAGAAAAGGACCATTCAGGTGCAAACTATTCTAGAGAATGGTGTTTCTGAAATCACTGTGTTGCTTAACCTTGATAAGCC
AAGAAGGGATTGCTTTGAAATCCGGAGCGAAGATGGAAATAAGTTTATTAGTCTTTAG

mRNA sequence

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Protein sequence

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MTEVKRDGVAVKFSHEKENEWRGGCVKRGFTSPFMAPRKRSKNQENESTTEKSTLITSRIDSNVTRFSKSKKVKHAPKKNGKVEEDENKEVEVDAGLKELDKDAKSKTVV
IEHCKQCQSFKKRTIQVQTILENGVSEITVLLNLDKPRRDCFEIRSEDGNKFISL

PI0021507 (gene) of Melon (PI 482460) v1 genome