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PI0021545 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021545
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:21089898..21091357
RNA-Seq ExpressionPI0021545
SyntenyPI0021545
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.4e-6369.02Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRW NDNQ+ +QA  +S+NQGTNLED++KALAT+T+ FQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++GKGKLP QPD+ANVSAISL SGKIL+TP++KE KVTS    L +K+E KEEK+ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.5e-6367.93Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KALAT+T+ FQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++GKGKL  Q ++ANVSA+SL SGKIL+TP++KE K TS P  L  K+E KEEK+ET+  P +SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-6268.48Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRW NDNQ+ +QA  +S+NQGTNLED++KAL T T+ FQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++ KGKLP QPDHANVSAISL SGKIL+T ++KE KVTS P    +K+E KEEK+ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-6469.95Show/hide
Query:  TTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQN
        TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KALAT+T+ FQ 
Subjt:  TTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQN

Query:  EMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
        EMKQQM+ LT AISK++GKGKLP Q DHANVSAISL SGKIL+TP++KE KVTS P  L +K+E KEEK+ET+  PS+SK  +
Subjt:  EMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.6e-6267.93Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRW NDNQ+ +QA  +S+NQGTNLED++KALAT+T+ FQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT  ISK++GKGKL  QPDHANVS ISL S KIL+TP++KE KVTS P  L +K+E KEEK ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

TrEMBL top hitse value%identityAlignment
A0A5A7UAL2 Retrotransposon gag protein5.9e-6368.48Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPH NTYN GWRDNPNLRW NDNQ+ +QA  +S+NQGTNLED++KAL T T+ FQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++ KGKLP QPDHANVSAISL SGKIL+T ++KE KVTS P    +K+E KEEK+ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

A0A5A7VQ60 Retrotransposon gag protein8.3e-6569.95Show/hide
Query:  TTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQN
        TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDPHSNTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KALAT+T+ FQ 
Subjt:  TTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQN

Query:  EMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
        EMKQQM+ LT AISK++GKGKLP Q DHANVSAISL SGKIL+TP++KE KVTS P  L +K+E KEEK+ET+  PS+SK  +
Subjt:  EMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

A0A5D3CRR8 Retrotransposon gag protein2.7e-6367.93Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRW NDNQ+ +QA S+S+NQGTNLED++KALAT+T+ FQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++GKGKL  Q ++ANVSA+SL SGKIL+TP++KE K TS P  L  K+E KEEK+ET+  P +SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

A0A5D3DCG3 Retrotransposon gag protein7.8e-6367.93Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ
        MT LLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRW NDNQ+ +QA  +S+NQGTNLED++KALAT+T+ FQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT  ISK++GKGKL  QPDHANVS ISL S KIL+TP++KE KVTS P  L +K+E KEEK ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

E5GBZ4 Retrotransposon gag protein7.0e-6469.02Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ
        MTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRW NDNQ+ +QA  +S+NQGTNLED++KALAT+T+ FQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++GKGKLP QPD+ANVSAISL SGKIL+TP++KE KVTS    L +K+E KEEK+ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKE-KVTSTPTLLENKDEKKEEKLETSSLPSSSKGTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCCATTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGA
AGAGGAAAATGTTATTAGGAAGTACGATCCTCATAGTAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCACAAG
CAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTGATACTATCTATTTTCAGAATGAAATGAAACAACAAATGTCTCATCTA
ACTAATGCCATAAGCAAATTAGAAGGTAAAGGAAAACTTCCAACTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTACAAGCGGTAAGATTCTGGAAACCCCTTC
AAGTAAAGAAAAGGTAACTTCTACCCCTACCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTTCTTCTAAAGGAACAAGGG
ATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCCATTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGACTTAGTGGA
AGAGGAAAATGTTATTAGGAAGTACGATCCTCATAGTAATACTTACAATGCCGGTTGGAGAGACAACCCTAATCTAAGATGGAGAAACGACAACCAAAGACCCTCACAAG
CAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTGATACTATCTATTTTCAGAATGAAATGAAACAACAAATGTCTCATCTA
ACTAATGCCATAAGCAAATTAGAAGGTAAAGGAAAACTTCCAACTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTACAAGCGGTAAGATTCTGGAAACCCCTTC
AAGTAAAGAAAAGGTAACTTCTACCCCTACCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTTCTTCTAAAGGAACAAGGG
ATTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSIKVAKCGVCGLVGHPNDKCPDLVEEENVIRKYDPHSNTYNAGWRDNPNLRWRNDNQRPSQATSSSNNQGTNLEDLVKALATDTIYFQNEMKQQMSHL
TNAISKLEGKGKLPTQPDHANVSAISLTSGKILETPSSKEKVTSTPTLLENKDEKKEEKLETSSLPSSSKGTRD