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PI0021560 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021560
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr01:11495965..11496219
RNA-Seq ExpressionPI0021560
SyntenyPI0021560
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035756.1 gag/pol protein [Cucumis melo var. makuwa]3.1e-2979.52Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        M  GK+VEAN+AT +K+ + GSSSKT+VGPSQ+K KGKGKTPK  KGKKVAKGKCYHCN+ GHWLRNCPKYLAEKKAEKEAQG
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

KAA0037892.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-2576.14Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPS----QMKNKGKGKTPKIGKGKKVA-KGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        M  GKQVEANVATTK+KF +GSSSK KVGPS    Q+K KGKGKTPK  KGKK A KGKCYHC QN HWLRNCPKYLAEKKAE + QG
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPS----QMKNKGKGKTPKIGKGKKVA-KGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

KAA0045181.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-2675.9Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        M  GK+VEANVATT+K+ ++GSSSKT+VGPSQ+K K KGK PK  KGKKVAKGKCYHCN++ HWL+NC KYLAEKKAEKEAQG
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

KAA0046201.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-2673.81Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN
        M   K++E+NVA T+K+ ++GSSSKT+VGPS MKNK KGKTP   KGK VAKGKCYHCN++GHWLRNCPKYLAEKKAEKEAQ N
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN

TYK29862.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-2979.52Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        M  GK+VEAN+ATT+K+ + GSSSKT+VGPSQ+K KGKGKTPK  KGKKVAKGKCYHCN++GHWLRNCP+YLAEKKAEKEAQG
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

TrEMBL top hitse value%identityAlignment
A0A5A7T0L9 Gag/pol protein1.5e-2979.52Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        M  GK+VEAN+AT +K+ + GSSSKT+VGPSQ+K KGKGKTPK  KGKKVAKGKCYHCN+ GHWLRNCPKYLAEKKAEKEAQG
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

A0A5A7T339 Gag/pol protein7.7e-2676.14Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPS----QMKNKGKGKTPKIGKGKKVA-KGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        M  GKQVEANVATTK+KF +GSSSK KVGPS    Q+K KGKGKTPK  KGKK A KGKCYHC QN HWLRNCPKYLAEKKAE + QG
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPS----QMKNKGKGKTPKIGKGKKVA-KGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

A0A5A7TUI5 Gag/pol protein5.3e-2775.9Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        M  GK+VEANVATT+K+ ++GSSSKT+VGPSQ+K K KGK PK  KGKKVAKGKCYHCN++ HWL+NC KYLAEKKAEKEAQG
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

A0A5A7TXW7 Gag/pol protein9.1e-2773.81Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN
        M   K++E+NVA T+K+ ++GSSSKT+VGPS MKNK KGKTP   KGK VAKGKCYHCN++GHWLRNCPKYLAEKKAEKEAQ N
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN

A0A5D3E1U5 Gag/pol protein6.7e-3079.52Show/hide
Query:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        M  GK+VEAN+ATT+K+ + GSSSKT+VGPSQ+K KGKGKTPK  KGKKVAKGKCYHCN++GHWLRNCP+YLAEKKAEKEAQG
Subjt:  MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGGGGAAACAAGTAGAAGCAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCATCCTCTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGG
AAAGGGGAAGACTCCCAAGATTGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCACTGTAACCAAAACGGGCATTGGTTAAGGAATTGCCCGAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATGGGGAAACAAGTAGAAGCAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCATCCTCTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGG
AAAGGGGAAGACTCCCAAGATTGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCACTGTAACCAAAACGGGCATTGGTTAAGGAATTGCCCGAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG
Protein sequenceShow/hide protein sequence
MDMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN