CuGenDBv2

Gene ID	PI0021561
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	F-box protein SNE
Genome location	chr11:19155273..19156792
RNA-Seq Expression	PI0021561
Synteny	PI0021561
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

5.9e-79

97.37

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        +DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

9.1e-80

98.03

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        +DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

2.2e-78

96.71

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        +DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_022985800.1 F-box protein SNE-like [Cucurbita maxima]

3.6e-76

94.12

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVKSVV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI-GGDASALSLMFLCNTVNV
        +DL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+ GGDASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI-GGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

7.0e-80

98.68

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        +DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

4.4e-80

98.03

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        +DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

1.1e-78

96.71

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        +DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

2.9e-79

97.37

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        +DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A6J1FVJ9 F-box protein SNE-like

3.0e-76

92.86

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVKSVV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI--GGDASALSLMFLCNTVNV
        +DL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+  GGDASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI--GGDASALSLMFLCNTVNV

A0A6J1JCA9 F-box protein SNE-like

1.7e-76

94.12

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVKSVV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI-GGDASALSLMFLCNTVNV
        +DL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+ GGDASALSLMFLCNTVNV
Subjt:  TDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI-GGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.7e-10

33.91

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Query:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYTDLVRRVWTQDEV
        D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       +++VV +LGG++RL+ V IRP       V  + G      R+  +D+V
Subjt:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYTDLVRRVWTQDEV

Query:  QLSLSLFCVDYYERL
        QLSLSLF + +++ +
Subjt:  QLSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

2.4e-35

53.9

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYTDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYTDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

6.5e-12

35.04

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Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYTDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH  +     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYTDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

4.6e-13

35.04

Show/hide

Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYTDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH  +     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYTDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

AT5G48170.1 F-box family protein

1.7e-36

53.9

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYTDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYTDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGACGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCT
CGGCGTCGCGACCTGTGTGTGCCGGCTCTGGTGCACCATCGCTCGAAGTGAATCGGTGTGGGAACAAGTCTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCGGTGA
AATCGGTGGTAGCCGCCTTGGGAGGCTACAAGCGGCTGTACATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACACGGACCTGGTGAGGCGAGTTTGGACTCAG
GATGAGGTTCAACTTTCACTTTCTCTGTTTTGTGTGGATTATTACGAGAGACTCACTGGGAGTGGAAGAATCGGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTGTG
CAACACCGTGAACGTCTGA

mRNA sequence

Show/hide mRNA sequence

GTGACATCATAAAAACTTTCAAAAAAGAAAAAAGAAAAATACTATCTTTTTCATTTGCAATTATTTTCATAAACCCTTTACAGACATCTCTTTTAATTTATATTATAATT
TGCAAAACTAAATGCAATCTTAATCAAGATTCATTGCACATATTATCTGTCAGGACATCATCAACATTTTAAAAATCCATAATTTGATATGGCACTATATAGAAATTGAT
GGTTCATGATTAGCGTCCAGTAAACAATGTCTAGTGATGGTCCACAGTCCACACACTGAAGTTAAGAAAAGATAGGCATAAAAAAAATACTTAAAAGACAGTAACATATC
CATGCACAGCTGATTTCAATTTCAAGGTTCTCCCTCCTTCTTTGAAGAGTGGTTCCCAAATCACAACGGACACATGCCCAAAATCTTGGAATATGCACAAACTAAATTCA
ACTACAGTTTCAGCTTCTGCTAAACCCAAAACCAAATTTGTTTATTGAAAAAAGAAACCAAAGAAAGAGAAAGTTAAACAGCATCCCATTCATTTGCATTGGTTTTGAGG
TTTTTTTTTTTATTTGGATCTTCTTCTTTGGCCCCATGTCCTCCCCCCTCGATACCCTCTCAATCCTTCTCACAGGCATTTTCACAAACACGCGGACTTCGAGACGCACA
GCAAGACAAATCCTATCTTAGACTTTTTCTCCTTGTTAATGAATTTCCATCGGATAGAACTCTCTCTCTCTCTCTTTCCATCTCTCAATCTAATGTCAATTCCATATATA
TCAAAGACGCGTAGAGTTTCAAGCTTCACCTACCAAATTCCTAATTACTCTGGGGCTTAAACATAAACAATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGACG
GAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCTCGGCGTCGCGACCTGTGTGTGCCGGCTCTGGTGCACCATCG
CTCGAAGTGAATCGGTGTGGGAACAAGTCTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCGGTGAAATCGGTGGTAGCCGCCTTGGGAGGCTACAAGCGGCTGTAC
ATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACACGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTTCAACTTTCACTTTCTCTGTTTTGTGTGGATTA
TTACGAGAGACTCACTGGGAGTGGAAGAATCGGCGGCGATGCGTCCGCATTGTCCCTCATGTTCCTGTGCAACACCGTGAACGTCTGATTCATCCAATGGCTTTTTGTGA
TACTTTCTCCGCCGTCCGATTTGCAGACCAAATCTATATATAAGAAAACCAAGCTGGATCTGGTGATTTTAGTCAAAAGGATTAAGATTAGCCTTAGCCTGGTACGAATA
TGAATATAAAATATGATGATTTTTCTAATTATACACCCATTTTCTTAAATAAAAAACATAGAACTATTTTTTTCTACATGTTGATTATTG

Protein sequence

Show/hide protein sequence

MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYTDLVRRVWTQ
DEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

PI0021561 (gene) of Melon (PI 482460) v1 genome