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PI0021567 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021567
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionstructure-specific endonuclease subunit slx1
Genome locationchr04:11312269..11316413
RNA-Seq ExpressionPI0021567
SyntenyPI0021567
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018060.1 slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-7080.84Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK
        MRLLS TFR QK PIS+P++SKSSSSSTK PTLIVKSEP+PK+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC I+GFK
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK

Query:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDP
        DQSQACEFESKWK++ RK+ + +KE     ++DD TLRLLK RQRALGKVK LFDC+QFEFDW+LDP
Subjt:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDP

XP_004151512.1 structure-specific endonuclease subunit SLX1 [Cucumis sativus]3.2e-8694.12Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKP--KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYG
        MRLLSHTFRC KPPISNP LSKSSSSS+K PTLIVKSEPKP  KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTI+G
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKP--KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKWKKVSRKISYEKKE+DVGK LDDQTLRLLKHR+RALGKVKCLFDCSQFEFDWKLDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

XP_008461838.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo]7.2e-8694.08Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVK-SEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGF
        MRLLS TFRCQKPPISNP+L KSSSSSTK PTLIVK  EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTI+GF
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVK-SEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGF

Query:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
        KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLD+QTLRLLKHRQRALGKVKCLFDCS FEFDWKLDPF
Subjt:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

XP_022934184.1 structure-specific endonuclease subunit slx1 [Cucurbita moschata]8.6e-7180.84Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK
        MRLLS TFR QK PIS+P++SKSSSSSTK PTLIVKSEP+PK+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC I+GFK
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK

Query:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDP
        DQSQACEFESKWK++ RK+ + +KE     ++DD TLRLLK RQRALGKVK LFDC+QFEFDW+LDP
Subjt:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDP

XP_038903984.1 structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]1.7e-8290.48Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK
        MRLLS TFR QKP  SN QLSKSSSSSTK P LIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTI+GFK
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK

Query:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
        DQ QACEFESKWK+VSRKISY+KKEDD+GKQ+DDQTLRLLKHRQRALGKVKCLFDCSQFEF+WKLDPF
Subjt:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ9 GIY-YIG domain-containing protein1.6e-8694.12Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKP--KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYG
        MRLLSHTFRC KPPISNP LSKSSSSS+K PTLIVKSEPKP  KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTI+G
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKP--KQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYG

Query:  FKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
        FKDQSQACEFESKWKKVSRKISYEKKE+DVGK LDDQTLRLLKHR+RALGKVKCLFDCSQFEFDWKLDPF
Subjt:  FKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

A0A1S3CFH5 structure-specific endonuclease subunit slx13.5e-8694.08Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVK-SEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGF
        MRLLS TFRCQKPPISNP+L KSSSSSTK PTLIVK  EPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPWICACTI+GF
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVK-SEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGF

Query:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
        KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLD+QTLRLLKHRQRALGKVKCLFDCS FEFDWKLDPF
Subjt:  KDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

A0A6J1DGL6 structure-specific endonuclease subunit SLX13.1e-6676.02Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYP---TLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIY
        MRLLSHTFRC K PISNP+   SSSSSTK P   TL  +S+ KPK WCVYLIISSNSP KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPW+CAC I+
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYP---TLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIY

Query:  GFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
        GFKDQSQACEFESKWK+VSRKI++++K+DD  +Q D+Q LRLLK+RQRAL KVK +FDCS+FEFD +LDPF
Subjt:  GFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

A0A6J1F1V2 structure-specific endonuclease subunit slx14.1e-7180.84Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK
        MRLLS TFR QK PIS+P++SKSSSSSTK PTLIVKSEP+PK+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC I+GFK
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK

Query:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDP
        DQSQACEFESKWK++ RK+ + +KE     ++DD TLRLLK RQRALGKVK LFDC+QFEFDW+LDP
Subjt:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDP

A0A6J1J5C9 structure-specific endonuclease subunit slx1 isoform X17.1e-7179.76Show/hide
Query:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK
        MRLLS TFR QK PIS+P++SKSSSSSTK PTL +KSEP+ K+WCVYLIISSN PIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICAC I+GFK
Subjt:  MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFK

Query:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF
        +QSQACEFESKWK++ RK+S+ +KE     ++DDQTLRLLK RQRALGKVK LFDC+QFEFDW+LDPF
Subjt:  DQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF

SwissProt top hitse value%identityAlignment
A8PWH1 Structure-specific endonuclease subunit SLX16.1e-1143.24Show/hide
Query:  PKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFKDQSQACEFESKWKK
        P+ +  Y + S + P +TY+G T D  RRL+QHNG +K GA  TR  RPW     +YGF  +  A +FE  W+K
Subjt:  PKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFKDQSQACEFESKWKK

B6JY16 Structure-specific endonuclease subunit slx12.5e-1246.48Show/hide
Query:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFKDQSQACEFESKWK
        +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC ++GF  +  A +FE  W+
Subjt:  WCVYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFKDQSQACEFESKWK

B6QFH5 Structure-specific endonuclease subunit slx12.3e-1041.38Show/hide
Query:  PTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIYGFKDQSQACEFESKWKKV
        P  +   +P P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW     I GF  ++ A +FE  W+ V
Subjt:  PTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIYGFKDQSQACEFESKWKKV

B8MDD1 Structure-specific endonuclease subunit slx16.1e-1142.17Show/hide
Query:  VKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIYGFKDQSQACEFESKWKKV
        V ++P P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     + GF  ++ A +FE  W+ V
Subjt:  VKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWICACTIYGFKDQSQACEFESKWKKV

Q9P7M3 Structure-specific endonuclease subunit slx14.2e-1240Show/hide
Query:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLK
        +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C +YGF ++  A +FE  W+ +   IS   K+ D   +     +  LK
Subjt:  WCVYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLK

Arabidopsis top hitse value%identityAlignment
AT2G30350.2 Excinuclease ABC, C subunit, N-terminal3.4e-0945.61Show/hide
Query:  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFKDQSQACEFESKWK
        +TY+G T++  RR++QHNGEI  GA  T+  RPW     IYGF     A +FE  W+
Subjt:  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFKDQSQACEFESKWK

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal9.8e-4152.02Show/hide
Query:  RLLSHTFRCQKPPISNPQLS-----KSSSSSTKYPTLIVKSE----PKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC
        RLLS TF   K   SNP+       K+S +    P+     E    PK K W VYLI+S+  PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+C
Subjt:  RLLSHTFRCQKPPISNPQLS-----KSSSSSTKYPTLIVKSE----PKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWIC

Query:  ACTIYGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKL
        AC I GF   SQA  FESKWK  +RK+   KK++D+      Q+  LL+HR+RAL KV+   DCS  E DWK+
Subjt:  ACTIYGFKDQSQACEFESKWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCACAACTTTCCAAATCTTCTTCTTCTTCAACTAAGTATCCAACACTGATTGTTAAATC
AGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCTAATTCCCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTTGATCGACGTTTGAAACAACATA
ATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTTATGGTTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCA
AAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATGATCAAACATTAAGATTGCTGAAGCACAGGCAAAGAGCTTT
AGGAAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTAGATCCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
CGAACCCGCGCCGAAGAAGAGGAACCGAAGAAAGAAAATGAGACTGCTCTCTCACACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCACAACTTTCCAAATCTTCTT
CTTCTTCAACTAAGTATCCAACACTGATTGTTAAATCAGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCTAATTCCCCCATCAAAACCTATGTAGGG
GTCACCCTTGACTTTGATCGACGTTTGAAACAACATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCGAGCGGGACGACCCTGGATTTGTGCGTGCACAATTTATGG
TTTTAAAGACCAAAGTCAAGCTTGTGAGTTTGAATCAAAATGGAAAAAAGTTTCAAGGAAAATATCCTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATGATC
AAACATTAAGATTGCTGAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTTTGTTTGATTGCAGTCAATTTGAGTTTGATTGGAAATTAGATCCTTTCTGATTCTTT
ACATGGGTTGTGGTTTTTCTTTTTCTTTTACAAATATTTATTTATTTATTTTCAATTCTATGAATTGAAATAATGATTGTTTATAAGATAAATATCATGTTTAAAATTGT
GTTAAATGTAGTAGTTATGATTTGGTTTTAATTCTAAAGCA
Protein sequenceShow/hide protein sequence
MRLLSHTFRCQKPPISNPQLSKSSSSSTKYPTLIVKSEPKPKQWCVYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIYGFKDQSQACEFES
KWKKVSRKISYEKKEDDVGKQLDDQTLRLLKHRQRALGKVKCLFDCSQFEFDWKLDPF