; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0021577 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021577
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:6723300..6724814
RNA-Seq ExpressionPI0021577
SyntenyPI0021577
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.5e-2452.31Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGKLPA
        GHPNDKCP+++E+ N++RKYDP GNTYN+     P L              T +N    L  IIK           EMKQQM+QLT AISK++GKGKLPA
Subjt:  GHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGKLPA

Query:  QPDHANVSAISLRNGKILQPPPSEEKVSSS
        QPD+ANVSAISLR+GKIL  P ++EK  +S
Subjt:  QPDHANVSAISLRNGKILQPPPSEEKVSSS

KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-2450Show/hide
Query:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKCP+++EE N+++KYDP  NTYN      P L             TT +N    L  IIK           EMKQQM+QLT  ISK++GKGK
Subjt:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRNGKILQPPPSEEKVSSSL
        LPAQP+HANVS ISLR+GKIL  P ++EK  +S+
Subjt:  LPAQPDHANVSAISLRNGKILQPPPSEEKVSSSL

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-2452.31Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGKLPA
        GH NDKCP+++E+ N++RKYDP GNTYN+     P L              T +N    L  IIK           EMKQQM+QLT AISK++GKGKLPA
Subjt:  GHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGKLPA

Query:  QPDHANVSAISLRNGKILQPPPSEEKVSSS
        QPDHANVSAISLR+GKIL  P ++EK  +S
Subjt:  QPDHANVSAISLRNGKILQPPPSEEKVSSS

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-2553.49Show/hide
Query:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTLDGETTINNHKQL----------LPQIIK----------NEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKCP+++E+ N++R+YDP GNTYN      P L       NH Q           L  IIK           EMKQQM+QLT AISK++GKGK
Subjt:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTLDGETTINNHKQL----------LPQIIK----------NEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRNGKILQPPPSEEK
        LPAQPDHANVSAISLR+GKIL  P ++EK
Subjt:  LPAQPDHANVSAISLRNGKILQPPPSEEK

TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.4e-2450.38Show/hide
Query:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTLDGETTINNHKQL----------LPQIIK----------NEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKC +++E+ N++R+Y+P GNTYN+     P L        H Q           L  IIK           EMKQQM+QLT AISK++GKGK
Subjt:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTLDGETTINNHKQL----------LPQIIK----------NEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRNGKILQPPPSEEKVSSS
        LPAQPDHANVSAISLR+GKIL  P ++EK  +S
Subjt:  LPAQPDHANVSAISLRNGKILQPPPSEEKVSSS

TrEMBL top hitse value%identityAlignment
A0A5A7SRF5 Retrotransposon gag protein9.4e-2550Show/hide
Query:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKCP+++EE N+++KYDP  NTYN      P L             TT +N    L  IIK           EMKQQM+QLT  ISK++GKGK
Subjt:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRNGKILQPPPSEEKVSSSL
        LPAQP+HANVS ISLR+GKIL  P ++EK  +S+
Subjt:  LPAQPDHANVSAISLRNGKILQPPPSEEKVSSSL

A0A5A7T4R3 Retrotransposon gag protein1.2e-2452.31Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGKLPA
        GH NDKCP+++E+ N++RKYDP GNTYN+     P L              T +N    L  IIK           EMKQQM+QLT AISK++GKGKLPA
Subjt:  GHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGKLPA

Query:  QPDHANVSAISLRNGKILQPPPSEEKVSSS
        QPDHANVSAISLR+GKIL  P ++EK  +S
Subjt:  QPDHANVSAISLRNGKILQPPPSEEKVSSS

A0A5D3CFE7 Retrotransposon gag protein5.0e-2653.49Show/hide
Query:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTLDGETTINNHKQL----------LPQIIK----------NEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKCP+++E+ N++R+YDP GNTYN      P L       NH Q           L  IIK           EMKQQM+QLT AISK++GKGK
Subjt:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTLDGETTINNHKQL----------LPQIIK----------NEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRNGKILQPPPSEEK
        LPAQPDHANVSAISLR+GKIL  P ++EK
Subjt:  LPAQPDHANVSAISLRNGKILQPPPSEEK

A0A5D3DS57 Retrotransposon gag protein3.6e-2450.38Show/hide
Query:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTLDGETTINNHKQL----------LPQIIK----------NEMKQQMSQLTNAISKLEGKGK
        G  GHPNDKC +++E+ N++R+Y+P GNTYN+     P L        H Q           L  IIK           EMKQQM+QLT AISK++GKGK
Subjt:  GSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTLDGETTINNHKQL----------LPQIIK----------NEMKQQMSQLTNAISKLEGKGK

Query:  LPAQPDHANVSAISLRNGKILQPPPSEEKVSSS
        LPAQPDHANVSAISLR+GKIL  P ++EK  +S
Subjt:  LPAQPDHANVSAISLRNGKILQPPPSEEKVSSS

E5GBZ4 Retrotransposon gag protein7.2e-2552.31Show/hide
Query:  GHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGKLPA
        GHPNDKCP+++E+ N++RKYDP GNTYN+     P L              T +N    L  IIK           EMKQQM+QLT AISK++GKGKLPA
Subjt:  GHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTL----------DGETTINNHKQLLPQIIK----------NEMKQQMSQLTNAISKLEGKGKLPA

Query:  QPDHANVSAISLRNGKILQPPPSEEKVSSS
        QPD+ANVSAISLR+GKIL  P ++EK  +S
Subjt:  QPDHANVSAISLRNGKILQPPPSEEKVSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCTTCGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGC
CGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAACAATCAACAACCACAAGCAACTTCTTCCTCAAATAATCAAGAATGAAATGAAACAACAGATGTCTCAATTAA
CCAATGCAATAAGTAAGTTAGAAGGCAAAGGTAAGCTGCCTGCTCAGCCTGACCACGCAAACGTAAGTGCCATCTCACTTAGAAACGGTAAAATTCTGCAACCTCCTCCA
AGTGAAGAAAAGGTATCTTCTAGCCTGACCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCTTCGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGC
CGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAACAATCAACAACCACAAGCAACTTCTTCCTCAAATAATCAAGAATGAAATGAAACAACAGATGTCTCAATTAA
CCAATGCAATAAGTAAGTTAGAAGGCAAAGGTAAGCTGCCTGCTCAGCCTGACCACGCAAACGTAAGTGCCATCTCACTTAGAAACGGTAAAATTCTGCAACCTCCTCCA
AGTGAAGAAAAGGTATCTTCTAGCCTGACCTTCTAA
Protein sequenceShow/hide protein sequence
MAPLPGSFGHPNDKCPDLVEEANVIRKYDPQGNTYNAVGEIIPTLDGETTINNHKQLLPQIIKNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRNGKILQPPP
SEEKVSSSLTF