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PI0021603 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021603
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr09:17776406..17776905
RNA-Seq ExpressionPI0021603
SyntenyPI0021603
Gene Ontology termsNA
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.6e-4761.59Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK---------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTI
        ++FLTKYH + DYSNKEVVLR P K E+K   +K         KARKL+K  H+  L  V++T A RNDP  VPIVC+Y++VFP+E+SGL P+REI+FTI
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK---------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTI

Query:  EVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        E+V GTTPISQT YRM   ELKELK QL+EL+EK YIQ  TS W AP LF +K+DGS+RLCIDY
Subjt:  EVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

KAA0041141.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.6e-4565.16Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNKKARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTIEVVPGTTPI
        M+FLTKYH +LD SNKEVVLR+ GKFEVK              H   L  V+DTQ +++D  +VPIV +YL+VFPEE+S L PK EIE TI+V+P TTPI
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNKKARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTIEVVPGTTPI

Query:  SQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        SQT YRM PSELKELK+QL+ELLEKGYIQ ST  W  P LFVKKKDGSMRLCIDY
Subjt:  SQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

KAA0042456.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-4056.02Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK-----------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEF
        MDFL  ++  +D   KEVV RKPG  EV   G +           KA KL++KG    L  +V  Q  +  P  VP+V ++L+VFP+++SGLPP REIEF
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK-----------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEF

Query:  TIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        TIE++PGT PISQ SYRM PSELKELK QLQEL++KGYI+ S S W AP LFVKKKDG++RLCIDY
Subjt:  TIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

TYK01558.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-4062.42Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK-----------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEF
        M FLTKYH   D SN EVVL++  KF+VK++ NK           KA K I+K +IV L  +VDTQA+ NDP SV IVCKYL+VF +EM+GLP KREI+F
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK-----------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEF

Query:  TIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKD
        TIEVV  TTPISQTSY M PSELKELK+QL+ELLE+ YIQ +TS W  P LFVKK D
Subjt:  TIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKD

TYK02467.1 uncharacterized protein E5676_scaffold1738G00930 [Cucumis melo var. makuwa]3.7e-4463.87Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNKKARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTIEVVPGTTPI
        M+FLTKYH +LD SNKEVVLR+ GKFEVK              H   L  V+DT+ +++D ++VPIVC+YL+VFPEE+S L  K EIE TI+V+P TTPI
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNKKARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTIEVVPGTTPI

Query:  SQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        SQT YRM PSELKELK+QL+ELLEKG IQ ST  W  P LFVKKKDGSMRLCIDY
Subjt:  SQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

TrEMBL top hitse value%identityAlignment
A0A5A7THJ0 DNA/RNA polymerases superfamily protein1.2e-4565.16Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNKKARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTIEVVPGTTPI
        M+FLTKYH +LD SNKEVVLR+ GKFEVK              H   L  V+DTQ +++D  +VPIV +YL+VFPEE+S L PK EIE TI+V+P TTPI
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNKKARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTIEVVPGTTPI

Query:  SQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        SQT YRM PSELKELK+QL+ELLEKGYIQ ST  W  P LFVKKKDGSMRLCIDY
Subjt:  SQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

A0A5A7TKI0 DNA/RNA polymerases superfamily protein5.4e-4156.02Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK-----------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEF
        MDFL  ++  +D   KEVV RKPG  EV   G +           KA KL++KG    L  +V  Q  +  P  VP+V ++L+VFP+++SGLPP REIEF
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK-----------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEF

Query:  TIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        TIE++PGT PISQ SYRM PSELKELK QLQEL++KGYI+ S S W AP LFVKKKDG++RLCIDY
Subjt:  TIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

A0A5A7V2E0 Reverse transcriptase5.4e-4156.02Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK-----------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEF
        MDFL  ++  +D   KEVV RKPG  EV   G +           KA KL++KG    L  +V  Q  +  P  VP+V ++L+VFP+++SGLPP REIEF
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK-----------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEF

Query:  TIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        TIE++PGTTPISQ  YRM PSELKELK QLQEL++KGYI+ S S W AP LFVKKKDG++RLCIDY
Subjt:  TIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

A0A5D3BSQ2 Uncharacterized protein1.8e-4463.87Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNKKARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTIEVVPGTTPI
        M+FLTKYH +LD SNKEVVLR+ GKFEVK              H   L  V+DT+ +++D ++VPIVC+YL+VFPEE+S L  K EIE TI+V+P TTPI
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNKKARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTIEVVPGTTPI

Query:  SQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        SQT YRM PSELKELK+QL+ELLEKG IQ ST  W  P LFVKKKDGSMRLCIDY
Subjt:  SQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

A0A5D3D2P1 Putative Retrotransposon protein7.8e-4861.59Show/hide
Query:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK---------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTI
        ++FLTKYH + DYSNKEVVLR P K E+K   +K         KARKL+K  H+  L  V++T A RNDP  VPIVC+Y++VFP+E+SGL P+REI+FTI
Subjt:  MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNK---------KARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTI

Query:  EVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        E+V GTTPISQT YRM   ELKELK QL+EL+EK YIQ  TS W AP LF +K+DGS+RLCIDY
Subjt:  EVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.7e-0426.03Show/hide
Query:  PKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        P + +EF +E+      +   +Y + P +++ + +++ + L+ G I+ S ++   P +FV KK+G++R+ +DY
Subjt:  PKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

P0CT41 Transposon Tf2-12 polyprotein1.7e-0426.03Show/hide
Query:  PKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        P + +EF +E+      +   +Y + P +++ + +++ + L+ G I+ S ++   P +FV KK+G++R+ +DY
Subjt:  PKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.5e-0532.1Show/hide
Query:  PEEMSGLPPKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        P +++ +P K +    IE+ PG        Y +     +E+ + +Q+LL+  +I  S S   +P + V KKDG+ RLC+DY
Subjt:  PEEMSGLPPKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.5e-0532.1Show/hide
Query:  PEEMSGLPPKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        P +++ +P K +    IE+ PG        Y +     +E+ + +Q+LL+  +I  S S   +P + V KKDG+ RLC+DY
Subjt:  PEEMSGLPPKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

Q9UR07 Transposon Tf2-11 polyprotein1.7e-0426.03Show/hide
Query:  PKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY
        P + +EF +E+      +   +Y + P +++ + +++ + L+ G I+ S ++   P +FV KK+G++R+ +DY
Subjt:  PKREIEFTIEVVPGTTPISQTSYRMVPSELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCCTCACCAAGTATCACACAGTGTTGGATTACTCTAATAAGGAGGTAGTATTGAGAAAACCAGGAAAATTTGAAGTTAAACTTTTAGGCAACAAGAAAGCAAG
GAAGTTGATAAAGAAGGGGCATATCGTCGACCTTACTCGCGTAGTAGACACCCAAGCAATAAGAAATGACCCAAGAAGTGTACCTATAGTTTGCAAGTACTTGAATGTAT
TTCCAGAAGAAATGAGTGGATTACCCCCAAAAAGAGAAATTGAGTTTACGATTGAGGTTGTGCCTGGAACAACACCAATTTCTCAAACTTCTTATCGCATGGTACCTAGC
GAGCTGAAGGAGTTAAAGGAACAATTGCAAGAACTGCTAGAGAAGGGTTATATTCAGTCTAGTACCTCACTTTGGGAAGCCCCTTCCTTATTTGTAAAGAAGAAAGATGG
ATCAATGAGGCTATGTATTGATTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCCTCACCAAGTATCACACAGTGTTGGATTACTCTAATAAGGAGGTAGTATTGAGAAAACCAGGAAAATTTGAAGTTAAACTTTTAGGCAACAAGAAAGCAAG
GAAGTTGATAAAGAAGGGGCATATCGTCGACCTTACTCGCGTAGTAGACACCCAAGCAATAAGAAATGACCCAAGAAGTGTACCTATAGTTTGCAAGTACTTGAATGTAT
TTCCAGAAGAAATGAGTGGATTACCCCCAAAAAGAGAAATTGAGTTTACGATTGAGGTTGTGCCTGGAACAACACCAATTTCTCAAACTTCTTATCGCATGGTACCTAGC
GAGCTGAAGGAGTTAAAGGAACAATTGCAAGAACTGCTAGAGAAGGGTTATATTCAGTCTAGTACCTCACTTTGGGAAGCCCCTTCCTTATTTGTAAAGAAGAAAGATGG
ATCAATGAGGCTATGTATTGATTACTGA
Protein sequenceShow/hide protein sequence
MDFLTKYHTVLDYSNKEVVLRKPGKFEVKLLGNKKARKLIKKGHIVDLTRVVDTQAIRNDPRSVPIVCKYLNVFPEEMSGLPPKREIEFTIEVVPGTTPISQTSYRMVPS
ELKELKEQLQELLEKGYIQSSTSLWEAPSLFVKKKDGSMRLCIDY