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PI0021616 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021616
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Genome locationchr07:14835398..14836390
RNA-Seq ExpressionPI0021616
SyntenyPI0021616
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041704.1 uncharacterized protein E6C27_scaffold67G00370 [Cucumis melo var. makuwa]7.2e-2838.67Show/hide
Query:  MAIKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVDP--------------------------------------------------
        M IKSIPRYAK LKELCTHKR  RS++KVMVSK +SSLIKKNL EKCVDP                                                  
Subjt:  MAIKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVDP--------------------------------------------------

Query:  -----------------------------------------------------------------EKHDKFNELIDQETLENVDNEF--DKPSDDDLSTY
                                                                         E+HDKFNELIDQ TLE V+NEF  +K SDDD S +
Subjt:  -----------------------------------------------------------------EKHDKFNELIDQETLENVDNEF--DKPSDDDLSTY

Query:  IDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDN
        +DF  S+NDEHALVDN  T  HHAL N+FA+SN+H LGR+I +D+E  LK I I+N
Subjt:  IDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDN

KAA0042324.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]6.3e-3255.84Show/hide
Query:  DKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDI
        D V  S    SL   +  E     E+HDKFNELIDQ TLE+V+NEF  +KPSDDDLS ++DFV S+NDE+ LVDN  T E H   N+F +SN+HD GR+I
Subjt:  DKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDI

Query:  KDDDEQILKTIGIDNIHNINSHIENLEKEN----DSCEIHLHKECENFNSDELT
        KDD E ILK+I I+N H+ + HI+N EKEN    D CE+ LHKECE+ N++ELT
Subjt:  KDDDEQILKTIGIDNIHNINSHIENLEKEN----DSCEIHLHKECENFNSDELT

KAA0053241.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.8e-3451.38Show/hide
Query:  MAIKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEFDKPSDDDLSTYIDFVISINDEHALVDNF
        M IKSIPRYAKFLKELCTHKR  RS++KVMVSK +SSLIKKNL EKCV+P                                                  
Subjt:  MAIKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEFDKPSDDDLSTYIDFVISINDEHALVDNF

Query:  TTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEK----ENDSCEIHLHKECENFNSDELTLLL
                 NNFA+SN+HDLG+DIKDDDEQILK+IGIDN H+ ++HIEN EK    ENDSCE++LHKECEN NS+ LTL L
Subjt:  TTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEK----ENDSCEIHLHKECENFNSDELTLLL

KAA0065429.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.6e-2770.71Show/hide
Query:  ENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEKE----NDSCE
        ++VDNEF  +KP+DDDLS +++FV SINDEHALVDN TT E HAL NNF +SN+HDLGRDIKDDDEQILK+I IDN H+IN+HI+N EKE    NDSCE
Subjt:  ENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEKE----NDSCE

KAE8647060.1 hypothetical protein Csa_022980 [Cucumis sativus]1.4e-3458.64Show/hide
Query:  DKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDI
        D +  S    SL   +  E     E+ DK NELIDQ TLE VDNEF  +KPSDDDLS +++FVISINDEHALVDN TT + HAL NNFA+S + DLGRDI
Subjt:  DKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDI

Query:  KDDDEQILKTIGIDNIHNINSHIENLEK-----ENDSCEIHLHKECENF----NSDELTLLL
        KD+DEQ LK I IDN  + + HI  L+K     END CE++LHKECENF    NS+ELTL L
Subjt:  KDDDEQILKTIGIDNIHNINSHIENLEK-----ENDSCEIHLHKECENF----NSDELTLLL

TrEMBL top hitse value%identityAlignment
A0A5A7TE46 Uncharacterized protein3.5e-2838.67Show/hide
Query:  MAIKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVDP--------------------------------------------------
        M IKSIPRYAK LKELCTHKR  RS++KVMVSK +SSLIKKNL EKCVDP                                                  
Subjt:  MAIKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVDP--------------------------------------------------

Query:  -----------------------------------------------------------------EKHDKFNELIDQETLENVDNEF--DKPSDDDLSTY
                                                                         E+HDKFNELIDQ TLE V+NEF  +K SDDD S +
Subjt:  -----------------------------------------------------------------EKHDKFNELIDQETLENVDNEF--DKPSDDDLSTY

Query:  IDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDN
        +DF  S+NDEHALVDN  T  HHAL N+FA+SN+H LGR+I +D+E  LK I I+N
Subjt:  IDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDN

A0A5A7UI66 Transposon Ty3-I Gag-Pol polyprotein3.3e-3451.38Show/hide
Query:  MAIKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEFDKPSDDDLSTYIDFVISINDEHALVDNF
        M IKSIPRYAKFLKELCTHKR  RS++KVMVSK +SSLIKKNL EKCV+P                                                  
Subjt:  MAIKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEFDKPSDDDLSTYIDFVISINDEHALVDNF

Query:  TTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEK----ENDSCEIHLHKECENFNSDELTLLL
                 NNFA+SN+HDLG+DIKDDDEQILK+IGIDN H+ ++HIEN EK    ENDSCE++LHKECEN NS+ LTL L
Subjt:  TTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEK----ENDSCEIHLHKECENFNSDELTLLL

A0A5A7VIZ2 Retrovirus-related Pol polyprotein from transposon 17.67.8e-2870.71Show/hide
Query:  ENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEKE----NDSCE
        ++VDNEF  +KP+DDDLS +++FV SINDEHALVDN TT E HAL NNF +SN+HDLGRDIKDDDEQILK+I IDN H+IN+HI+N EKE    NDSCE
Subjt:  ENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEKE----NDSCE

A0A5D3CW21 Retrovirus-related Pol polyprotein from transposon 297 family3.1e-3255.84Show/hide
Query:  DKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDI
        D V  S    SL   +  E     E+HDKFNELIDQ TLE+V+NEF  +KPSDDDLS ++DFV S+NDE+ LVDN  T E H   N+F +SN+HD GR+I
Subjt:  DKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEF--DKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDI

Query:  KDDDEQILKTIGIDNIHNINSHIENLEKEN----DSCEIHLHKECENFNSDELT
        KDD E ILK+I I+N H+ + HI+N EKEN    D CE+ LHKECE+ N++ELT
Subjt:  KDDDEQILKTIGIDNIHNINSHIENLEKEN----DSCEIHLHKECENFNSDELT

A0A5D3D5G7 Uncharacterized protein3.9e-2734.89Show/hide
Query:  IKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVD-----------------------------------------------------
        IK+I RYAKFLKE CTHKR  RS++KVMVSK ++SLIKKNLPEKCVD                                                     
Subjt:  IKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVD-----------------------------------------------------

Query:  ----------------------------------------------------------------------PEKHDKFNELIDQETLENVDNEF--DKPSD
                                                                               E+HDKFNEL DQ TL++V+ EF  +KPS+
Subjt:  ----------------------------------------------------------------------PEKHDKFNELIDQETLENVDNEF--DKPSD

Query:  DDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEKEND
        DDLS ++DFV S+NDEH LVDN  T  HH L N+FA+SN+HDLGR+I +DDE  LK  GIDN +++ +++  +  E D
Subjt:  DDLSTYIDFVISINDEHALVDNFTTLEHHALANNFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEKEND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATCAAAAGCATACCAAGGTACGCAAAATTTCTCAAGGAGTTGTGCACTCACAAGAGGATGAGAAGAAGCAAAGATAAAGTAATGGTTAGTAAAACTATCTCTTC
ACTCATAAAGAAGAATCTTCCAGAAAAATGTGTTGATCCCGAAAAGCATGATAAATTCAATGAGCTAATAGATCAAGAAACTCTAGAAAATGTTGATAATGAATTTGATA
AACCTAGTGATGATGATCTTTCTACCTATATTGACTTTGTTATTAGTATAAATGATGAGCATGCTTTAGTTGATAATTTTACAACACTTGAACATCATGCCCTAGCTAAT
AATTTTGCAACGAGTAATAAACATGATCTAGGAAGAGATATTAAGGATGATGATGAACAAATTTTAAAAACCATTGGCATTGACAATATTCATAACATAAACTCCCACAT
AGAAAACCTTGAAAAAGAGAATGATTCTTGTGAAATTCATTTGCATAAAGAATGTGAAAATTTTAATTCTGATGAACTTACTTTACTTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATCAAAAGCATACCAAGGTACGCAAAATTTCTCAAGGAGTTGTGCACTCACAAGAGGATGAGAAGAAGCAAAGATAAAGTAATGGTTAGTAAAACTATCTCTTC
ACTCATAAAGAAGAATCTTCCAGAAAAATGTGTTGATCCCGAAAAGCATGATAAATTCAATGAGCTAATAGATCAAGAAACTCTAGAAAATGTTGATAATGAATTTGATA
AACCTAGTGATGATGATCTTTCTACCTATATTGACTTTGTTATTAGTATAAATGATGAGCATGCTTTAGTTGATAATTTTACAACACTTGAACATCATGCCCTAGCTAAT
AATTTTGCAACGAGTAATAAACATGATCTAGGAAGAGATATTAAGGATGATGATGAACAAATTTTAAAAACCATTGGCATTGACAATATTCATAACATAAACTCCCACAT
AGAAAACCTTGAAAAAGAGAATGATTCTTGTGAAATTCATTTGCATAAAGAATGTGAAAATTTTAATTCTGATGAACTTACTTTACTTTTATAA
Protein sequenceShow/hide protein sequence
MAIKSIPRYAKFLKELCTHKRMRRSKDKVMVSKTISSLIKKNLPEKCVDPEKHDKFNELIDQETLENVDNEFDKPSDDDLSTYIDFVISINDEHALVDNFTTLEHHALAN
NFATSNKHDLGRDIKDDDEQILKTIGIDNIHNINSHIENLEKENDSCEIHLHKECENFNSDELTLLL