; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0021639 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021639
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr04:18881006..18881362
RNA-Seq ExpressionPI0021639
SyntenyPI0021639
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038028.1 polyprotein [Cucumis melo var. makuwa]1.8e-1952.83Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY
        +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N V + +SD ++   E  S ASIN     N D+ ++D Y   
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY

Query:  DINDPF
        DINDPF
Subjt:  DINDPF

KAA0040828.1 polyprotein [Cucumis melo var. makuwa]2.4e-1949.54Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY
        +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N V + +SD ++   E +S AS+N     + D+ ++D Y   
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY

Query:  DINDPFFIH
        +INDPF+ H
Subjt:  DINDPFFIH

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.4e-1951.89Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY
        +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N V + +SD ++   E  S AS+N     N D+ ++D Y   
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY

Query:  DINDPF
        DINDPF
Subjt:  DINDPF

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.8e-1951.89Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY
        +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N V + +SD ++   E  S AS+N     N D+ ++D Y   
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY

Query:  DINDPF
        DINDPF
Subjt:  DINDPF

TYK19825.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.8e-2256.7Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLY
        +K+DY HLEVNKMK WFKA+IHLQD+T+ EDE+FLLT+N +MSSL   G Q +FNS++N VA+QIS+PD+++ E +S AS+N   +E++D+D+F ++
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLY

TrEMBL top hitse value%identityAlignment
A0A5A7T5B0 Polyprotein8.9e-2052.83Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY
        +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N V + +SD ++   E  S ASIN     N D+ ++D Y   
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY

Query:  DINDPF
        DINDPF
Subjt:  DINDPF

A0A5A7TD15 Polyprotein1.2e-1949.54Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY
        +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N V + +SD ++   E +S AS+N     + D+ ++D Y   
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY

Query:  DINDPFFIH
        +INDPF+ H
Subjt:  DINDPFFIH

A0A5A7UVN1 Retrotransposable element Tf21.2e-1951.89Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY
        +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N V + +SD ++   E  S AS+N     N D+ ++D Y   
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY

Query:  DINDPF
        DINDPF
Subjt:  DINDPF

A0A5A7V6D1 Retrotransposable element Tf28.9e-2051.89Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY
        +K++Y HLEVNK+K WFKA+IHLQD+T+ EDE+FLLT+N VMS+L G  +Q +FNS++N V + +SD ++   E  S AS+N     N D+ ++D Y   
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADY

Query:  DINDPF
        DINDPF
Subjt:  DINDPF

A0A5D3D8C1 Retrotransposable element Tf28.6e-2356.7Show/hide
Query:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLY
        +K+DY HLEVNKMK WFKA+IHLQD+T+ EDE+FLLT+N +MSSL   G Q +FNS++N VA+QIS+PD+++ E +S AS+N   +E++D+D+F ++
Subjt:  KKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTTACGCATCAAATGGTGGAAAAAAATATGATTATTTCCATCTGGAAGTCAACAAGATGAAATATTGGTTCAAAGCTAGTATTCATCTCCAAGATATAACCAAGCATGA
AGACGAAAGCTTTCTTCTTACCGAAAACTTTGTCATGTCGTCGCTAACTGGAGTCGGTTCCCAAGCGGACTTCAACTCAATAATCAATATTGTCGCAATTCAAATCTCTG
ATCCCGACAATGCTCGAGAAGAAGCCTCGTCTTCAGCCTCTATCAATAAAGAAGCCGTAGAAAATGACGACGAAGACAACTTCGACTTGTATGCCGATTATGACATCAAC
GACCCATTTTTTATTCATATCCCATAA
mRNA sequenceShow/hide mRNA sequence
CTTTACGCATCAAATGGTGGAAAAAAATATGATTATTTCCATCTGGAAGTCAACAAGATGAAATATTGGTTCAAAGCTAGTATTCATCTCCAAGATATAACCAAGCATGA
AGACGAAAGCTTTCTTCTTACCGAAAACTTTGTCATGTCGTCGCTAACTGGAGTCGGTTCCCAAGCGGACTTCAACTCAATAATCAATATTGTCGCAATTCAAATCTCTG
ATCCCGACAATGCTCGAGAAGAAGCCTCGTCTTCAGCCTCTATCAATAAAGAAGCCGTAGAAAATGACGACGAAGACAACTTCGACTTGTATGCCGATTATGACATCAAC
GACCCATTTTTTATTCATATCCCATAA
Protein sequenceShow/hide protein sequence
LYASNGGKKYDYFHLEVNKMKYWFKASIHLQDITKHEDESFLLTENFVMSSLTGVGSQADFNSIINIVAIQISDPDNAREEASSSASINKEAVENDDEDNFDLYADYDIN
DPFFIHIP