CuGenDBv2

Gene ID	PI0021693
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr12:15374816..15375459
RNA-Seq Expression	PI0021693
Synteny	PI0021693
Gene Ontology terms	NA
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_031392147.1 uncharacterized protein LOC116204210 [Punica granatum]

2.1e-50

50.47

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Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT++GDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

XP_031392309.1 uncharacterized protein LOC116204368 [Punica granatum]

5.6e-51

50.93

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Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT+YGDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

XP_031393661.1 uncharacterized protein LOC116205261 [Punica granatum]

2.1e-50

50.47

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Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT++GDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

XP_031400978.1 uncharacterized protein LOC116210952 [Punica granatum]

2.1e-50

50.47

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Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT++GDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

XP_031402684.1 uncharacterized protein LOC116212259 [Punica granatum]

2.1e-50

50.47

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Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT++GDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

TrEMBL top hits

e value

%identity

Alignment

A0A6P8D4X0 Reverse transcriptase

1.0e-50

50.47

Show/hide

Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT++GDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

A0A6P8DCT8 Reverse transcriptase

2.7e-51

50.93

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Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT+YGDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

A0A6P8DJV3 Reverse transcriptase

1.0e-50

50.47

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Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT++GDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

A0A6P8E7C5 Reverse transcriptase

1.0e-50

50.47

Show/hide

Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT++GDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

A0A6P8E830 Reverse transcriptase

1.0e-50

50.47

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Query:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------
        MHRI+LEK A+ K  PQR+LN T+K+VVM+E+LKL D+ IIYP+ DS WVSPIHVVPKKTG+T+V+N++ +                             
Subjt:  MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQ-----------------------------

Query:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS
                              + G+YQI  A EDQ KTTFTC +GT+A+R MPF LC+A GTFQ CMMSIFSD IE CIEVFM+DFT++GDSFD  L++
Subjt:  ----------------------FFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSS

Query:  LELILHRCIETNIV
        L  +LHRCIE+N+V
Subjt:  LELILHRCIETNIV

SwissProt top hits

e value

%identity

Alignment

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

4.4e-06

26.51

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Query:  IVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQFF-------GFYQIPSACEDQNKTTFTCDYGT
        +V +KG      P +RL      V+    L  K +   YP+P          +P    M +    K +FF       G++QI  A  D+ KT+F+ + G 
Subjt:  IVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQFF-------GFYQIPSACEDQNKTTFTCDYGT

Query:  YAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSSLELILHRCIETNI
        Y F  +PF L NAS  FQ  +  +  + I K   V+++D  I+ ++   ++  ++ +L   I+ N+
Subjt:  YAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSSLELILHRCIETNI

P31843 RNA-directed DNA polymerase homolog

3.0e-07

32.53

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Query:  GFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMND---FTIYGDSFDAYLSSLELI
        G++Q+  A  D+ KTT    YG++ FR MPF L NA  TF + M ++  ++++  + V+++D   +TIY +S   ++  L ++
Subjt:  GFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNASGTFQHCMMSIFSDFIEKCIEVFMND---FTIYGDSFDAYLSSLELI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCACCGCATTGTCTTAGAGAAGGGAGCTAAGGACAAAATCCAACCTCAAAGAAGGCTAAATCAGACTTTGAAAGATGTTGTCATGGAGGAGGTGCTAAAGCTAAAAGA
TGTCGAAATCATCTATCCCGTCCCGGATAGTACATGGGTGAGTCCAATTCATGTGGTCCCAAAGAAAACAGGGATGACCGTTGTAGAAAATGACAAATACCAATTTTTTG
GTTTCTACCAAATCCCCAGTGCATGTGAAGACCAAAATAAAACAACTTTTACTTGTGATTATGGAACTTATGCATTTAGGCACATGCCATTTTGTCTTTGTAATGCATCA
GGCACATTCCAACATTGCATGATGAGCATCTTTTCCGACTTTATTGAAAAATGCATAGAAGTTTTCATGAATGATTTCACAATTTATGGTGATAGTTTTGATGCATACTT
ATCTAGTTTAGAATTAATTCTACATAGATGCATAGAAACTAACATTGTCTGA

mRNA sequence

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Protein sequence

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MHRIVLEKGAKDKIQPQRRLNQTLKDVVMEEVLKLKDVEIIYPVPDSTWVSPIHVVPKKTGMTVVENDKYQFFGFYQIPSACEDQNKTTFTCDYGTYAFRHMPFCLCNAS
GTFQHCMMSIFSDFIEKCIEVFMNDFTIYGDSFDAYLSSLELILHRCIETNIV

PI0021693 (gene) of Melon (PI 482460) v1 genome