CuGenDBv2

Gene ID	PI0021702
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr10:13733074..13734344
RNA-Seq Expression	PI0021702
Synteny	PI0021702
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

4.5e-02

63.16

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Query:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS
        NLI   MTN DI D +DE DST+ATT  ++IHYIETS+
Subjt:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

2.7e-47

52.78

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Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWF-------DVRFVMVTVRPTISRISQNLIADSMTNTDIP
        FLH+LAH+VKNRVIQREF+RSGET+SRHF++VLLAV+RLH ELL KPQP+ + C+D RWRWF       D  ++ V V P   R         +    + 
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWF-------DVRFVMVTVRPTISRISQNLIADSMTNTDIP

Query:  DKVDEGDSTYATTGGE
            +GD  Y  TG E
Subjt:  DKVDEGDSTYATTGGE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-47

63.19

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Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD
        FLH+LAH+VKNRVIQREF+RSGET+SRHF++VLLAV+RLH ELL KPQP+ + C+D RWRWF+
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

4.5e-02

63.16

Show/hide

Query:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS
        NLI   MTN DI D +DE DST+ATT  ++IHYIETS+
Subjt:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.6e-47

63.19

Show/hide

Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD
        FLH+LAH+VKNRVIQREF+RSGET+SRHF++VLLAV+RLH ELL KPQP+ + C+D RWRWF+
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD

KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]

1.1e-48

46.97

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Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQ+QLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD---------------------------------VR--
        FLH+LAH+VKNRVIQREF+RS ET+SRHF++VLLAV+RLH ELL KPQP+ + C+D RWRWF+                                 VR  
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD---------------------------------VR--

Query:  ------FVMVTVRPTISRISQNLIADSMT-----NTDIPDKVDEGDSTYATTGGEEIHYIETSS
              FV V      S     ++ D+++          D +DE DST+ATT  ++IHYIETS+
Subjt:  ------FVMVTVRPTISRISQNLIADSMT-----NTDIPDKVDEGDSTYATTGGEEIHYIETSS

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

3.5e-47

62.58

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Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD
        FLH+LAH+VKNRVIQREF+RSGET+SRHF++VLLAV+RLH ELL KPQP+ + C+D RW+WF+
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TXW1 Retrotransposon protein

5.8e-48

63.19

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Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD
        FLH+LAH+VKNRVIQREF+RSGET+SRHF++VLLAV+RLH ELL KPQP+ + C+D RWRWF+
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD

A0A5A7TXW1 Retrotransposon protein

2.2e-02

63.16

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Query:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS
        NLI   MTN DI D +DE DST+ATT  ++IHYIETS+
Subjt:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS

A0A5A7TXW1 Retrotransposon protein

7.6e-48

63.19

Show/hide

Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD
        FLH+LAH+VKNRVIQREF+RSGET+SRHF++VLLAV+RLH ELL KPQP+ + C+D RWRWF+
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD

A0A5A7VHB0 Retrotransposon protein

1.7e-47

61.96

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Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIHESDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD
        FLH+LAH+VKNRVIQREF+RSGET+ RHF+++ LAV+RLH ELL KPQP+ + C+D RWRWF+
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD

A0A5A7VHB0 Retrotransposon protein

2.2e-02

63.16

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Query:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS
        NLI   MTN DI D +DE DST+ATT  ++IHYIETS+
Subjt:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS

A0A5D3BDX0 Retrotransposon protein

2.2e-02

63.16

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Query:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS
        NLI   MTN DI D +DE DST+ATT  ++IHYIETS+
Subjt:  NLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSS

A0A5D3BDX0 Retrotransposon protein

1.3e-47

52.78

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Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQRQLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWF-------DVRFVMVTVRPTISRISQNLIADSMTNTDIP
        FLH+LAH+VKNRVIQREF+RSGET+SRHF++VLLAV+RLH ELL KPQP+ + C+D RWRWF       D  ++ V V P   R         +    + 
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWF-------DVRFVMVTVRPTISRISQNLIADSMTNTDIP

Query:  DKVDEGDSTYATTGGE
            +GD  Y  TG E
Subjt:  DKVDEGDSTYATTGGE

A0A5D3BZB1 Retrotransposon protein

5.3e-49

46.97

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Query:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM
        MD H ++AS++N FI SQ+QLLL LELL ND KRI  +P + RHRIRQLAYFRMIH SDLVCRQ                     L STE++DV+EMV M
Subjt:  MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQR--------------------LQSTEIIDVKEMVVM

Query:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD---------------------------------VR--
        FLH+LAH+VKNRVIQREF+RS ET+SRHF++VLLAV+RLH ELL KPQP+ + C+D RWRWF+                                 VR  
Subjt:  FLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFD---------------------------------VR--

Query:  ------FVMVTVRPTISRISQNLIADSMT-----NTDIPDKVDEGDSTYATTGGEEIHYIETSS
              FV V      S     ++ D+++          D +DE DST+ATT  ++IHYIETS+
Subjt:  ------FVMVTVRPTISRISQNLIADSMT-----NTDIPDKVDEGDSTYATTGGEEIHYIETSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

9.3e-06

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Query:  LVCRQRLQSTEIIDVKEMVVMFLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRL
        L  R  L+ T  I ++  + +FL ++ HN++ R +Q  F  SGET+SRHF+ VL AV+ +
Subjt:  LVCRQRLQSTEIIDVKEMVVMFLHVLAHNVKNRVIQREFVRSGETVSRHFSLVLLAVLRL

Sequences

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CDS sequence

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ATGGACACACACAACGATATTGCGTCCCTACTTAACGTGTTCATAACATCTCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAGCGCA
AGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGGCTTACTTTCGCATGATCCATGAAAGCGACCTCGTGTGTCGTCAAAGATTACAGTCGACCGAAATTATAGATG
TCAAAGAAATGGTCGTCATGTTTCTTCACGTACTGGCGCACAACGTGAAAAATCGTGTGATTCAACGTGAGTTTGTGCGGTCCGGTGAGACTGTTTCACGTCATTTCAGT
CTTGTACTACTGGCCGTTTTACGACTCCATGGCGAGCTTTTGGCAAAACCACAACCGATGACGAGCACTTGCTCTGATGCACGGTGGAGGTGGTTCGATGTACGATTTGT
CATGGTCACAGTCCGACCAACAATATCGCGTATTTCACAAAATCTCATAGCCGATTCTATGACGAACACTGACATACCAGACAAAGTTGATGAGGGTGACTCCACGTACG
CCACCACTGGCGGTGAGGAAATTCATTACATAGAGACGTCCAGCGCATGA

mRNA sequence

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Protein sequence

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MDTHNDIASLLNVFITSQRQLLLTLELLLNDNKRIAQVPSDMRHRIRQLAYFRMIHESDLVCRQRLQSTEIIDVKEMVVMFLHVLAHNVKNRVIQREFVRSGETVSRHFS
LVLLAVLRLHGELLAKPQPMTSTCSDARWRWFDVRFVMVTVRPTISRISQNLIADSMTNTDIPDKVDEGDSTYATTGGEEIHYIETSSA

PI0021702 (gene) of Melon (PI 482460) v1 genome