CuGenDBv2

Gene ID	PI0021704
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	AP-5 complex subunit beta-1
Genome location	chr08:822709..824321
RNA-Seq Expression	PI0021704
Synteny	PI0021704
Gene Ontology terms	GO:0015031 - protein transport (biological process) GO:0016197 - endosomal transport (biological process) GO:0030119 - AP-type membrane coat adaptor complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0067550.1 AP-5 complex subunit beta-1 [Cucumis melo var. makuwa]

4.0e-34

80.58

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Query:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP
        M +HPAMYATVLKFSSSASF PIPSRHIPF L ESPGDED   SRGVSSLDIVPIQNGYGKEERFKALV VELEPREPTPG VDVSIEST    +I + P
Subjt:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP

Query:  FTS
          S
Subjt:  FTS

XP_008466491.1 PREDICTED: uncharacterized protein LOC103503880 [Cucumis melo]

4.0e-34

80.58

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Query:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP
        M +HPAMYATVLKFSSSASF PIPSRHIPF L ESPGDED   SRGVSSLDIVPIQNGYGKEERFKALV VELEPREPTPG VDVSIEST    +I + P
Subjt:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP

Query:  FTS
          S
Subjt:  FTS

XP_011654553.1 uncharacterized protein LOC101219595 [Cucumis sativus]

2.9e-37

82.52

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Query:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP
        MD+HPAMYATVLKFSSSASF PIPSRHIPF L E+PGDEDAPSSRGVSSLDIVPIQNGYGKE+RFKALV VELEPREPTPG VDVSIEST    +I + P
Subjt:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP

Query:  FTS
          S
Subjt:  FTS

XP_023521414.1 uncharacterized protein LOC111785232 isoform X2 [Cucurbita pepo subsp. pepo]

3.1e-31

76.47

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Query:  DSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSPF
        D+HPAMYATVLKFSSSA F  IPSRHIPF L ES GDE +PS R VSSLDIVP+QNGYGK+ERFKALV VELEPREPTPGLVDVSIEST    +I + P 
Subjt:  DSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSPF

Query:  TS
         S
Subjt:  TS

XP_038876028.1 uncharacterized protein LOC120068363 [Benincasa hispida]

3.2e-36

80.58

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Query:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP
        MD+HPAMYATVLKFSSSASF PIP+RHIPF L ESPGDE +PSSRGVSSLDIVPIQNGYGK+ERFKALV VELEPREPTPGLVDVSIE+T    +I + P
Subjt:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP

Query:  FTS
          S
Subjt:  FTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJ67 AP-5 complex subunit beta-1

1.4e-37

82.52

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Query:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP
        MD+HPAMYATVLKFSSSASF PIPSRHIPF L E+PGDEDAPSSRGVSSLDIVPIQNGYGKE+RFKALV VELEPREPTPG VDVSIEST    +I + P
Subjt:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP

Query:  FTS
          S
Subjt:  FTS

A0A1S3CRD3 AP-5 complex subunit beta-1

1.9e-34

80.58

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Query:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP
        M +HPAMYATVLKFSSSASF PIPSRHIPF L ESPGDED   SRGVSSLDIVPIQNGYGKEERFKALV VELEPREPTPG VDVSIEST    +I + P
Subjt:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP

Query:  FTS
          S
Subjt:  FTS

A0A5D3BDX5 AP-5 complex subunit beta-1

1.9e-34

80.58

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Query:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP
        M +HPAMYATVLKFSSSASF PIPSRHIPF L ESPGDED   SRGVSSLDIVPIQNGYGKEERFKALV VELEPREPTPG VDVSIEST    +I + P
Subjt:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSP

Query:  FTS
          S
Subjt:  FTS

A0A6J1GY96 AP-5 complex subunit beta-1

1.5e-31

76.47

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Query:  DSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSPF
        D+HPAMYATVLKFSSSA F  IPSRHIPF L ES GDE +PS R VSSLDIVP+QNGYGK+ERFKALV VELEPREPTPGLVDVSIEST    +I + P 
Subjt:  DSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSPF

Query:  TS
         S
Subjt:  TS

A0A6J1JGZ1 AP-5 complex subunit beta-1

1.7e-30

74.51

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Query:  DSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSPF
        D+HPAMYATVLKFSS A F  IPSRHIPF L ES GDE +PS R  SSLDIVP+QNGYGK+ERFKALV VELEPREPTPGLVDVSIEST    +I + P 
Subjt:  DSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIEST----EITQSPF

Query:  TS
         S
Subjt:  TS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G19870.1 unknown protein

6.8e-16

53.26

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Query:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEER---FKALVEVELEPREPTPGLVDVSIES
        +DS PA++ATVLKFSSSA +  IPS  IPF L E   + + P+     SLDIV ++N   +EE+     A V VELEPREPTPGLV+VS+E+
Subjt:  MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEER---FKALVEVELEPREPTPGLVDVSIES

Sequences

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CDS sequence

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ATGGATAGTCATCCTGCAATGTATGCAACTGTGCTCAAGTTTTCTTCTTCTGCATCATTTGATCCTATTCCATCCCGTCATATACCTTTTACTTTGAGAGAGTCTCCTGG
GGATGAAGATGCTCCTAGTTCAAGGGGGGTCTCCTCATTGGACATCGTTCCTATACAGAATGGTTATGGGAAAGAAGAAAGATTTAAGGCTCTGGTAGAAGTTGAATTGG
AACCAAGGGAGCCCACACCAGGACTTGTTGATGTCTCAATTGAATCTACGGAAATAACACAAAGCCCCTTCACAAGCCCTTGTGCACAAAAGTGA

mRNA sequence

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Protein sequence

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MDSHPAMYATVLKFSSSASFDPIPSRHIPFTLRESPGDEDAPSSRGVSSLDIVPIQNGYGKEERFKALVEVELEPREPTPGLVDVSIESTEITQSPFTSPCAQK

PI0021704 (gene) of Melon (PI 482460) v1 genome