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PI0021713 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021713
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:15951418..15952882
RNA-Seq ExpressionPI0021713
SyntenyPI0021713
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.1e-6367.93Show/hide
Query:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGK L TP + E+KV S  + L  +N+ KEE +E N+S S+SK  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-6266.85Show/hide
Query:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGK L TP + E+K  S P+ L  +N+ KEE +E N S  +SK  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-6267.39Show/hide
Query:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPH NTYN+GWRDNP LRWGND Q+  QA S+S+NQG+NLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
         EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGK L TP + E+KV S  + L  +N+ KEEN+E N S S+ K  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.6e-6468.31Show/hide
Query:  TTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQN

Query:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
        EMKQQM+QLT AISK++GKGKLPAQ DHANVSAISLRSGK L TP + E+KV S P+ L  +N+ KEE +E N S S+SK  +
Subjt:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]3.3e-6367.39Show/hide
Query:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGK L TP + E+KV S  + L  +N+ KEE +E N SSS+SK  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032911.6e-6367.39Show/hide
Query:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPH NTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGK L TP + E+KV S  + L  +N+ KEE +E N SSS+SK  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

A0A5A7VE49 Retrotransposon gag protein7.8e-6367.39Show/hide
Query:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPH NTYN+GWRDNP LRWGND Q+  QA S+S+NQG+NLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
         EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGK L TP + E+KV S  + L  +N+ KEEN+E N S S+ K  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

A0A5A7VQ60 Retrotransposon gag protein4.2e-6468.31Show/hide
Query:  TTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQN

Query:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
        EMKQQM+QLT AISK++GKGKLPAQ DHANVSAISLRSGK L TP + E+KV S P+ L  +N+ KEE +E N S S+SK  +
Subjt:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

A0A5D3CRR8 Retrotransposon gag protein6.0e-6366.85Show/hide
Query:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGK L TP + E+K  S P+ L  +N+ KEE +E N S  +SK  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

E5GBZ4 Retrotransposon gag protein5.4e-6467.93Show/hide
Query:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGK L TP + E+KV S  + L  +N+ KEE +E N+S S+SK  +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPS-EEKVPSNPILLVDENKKKEENLENNVSSSSSKGTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGAAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGTAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTA
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAACCCTGCAAACCCCTCC
AAGCGAAGAAAAGGTACCATCTAACCCTATCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATCTAGAAAACAATGTCTCTTCTTCTTCTTCAAAAGGAACCAGGG
ATCGAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGAAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGTAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTA
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAACCCTGCAAACCCCTCC
AAGCGAAGAAAAGGTACCATCTAACCCTATCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATCTAGAAAACAATGTCTCTTCTTCTTCTTCAAAAGGAACCAGGG
ATCGAGCTTAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGENVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHVNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLQTPPSEEKVPSNPILLVDENKKKEENLENNVSSSSSKGTRDRA