CuGenDBv2

Gene ID	PI0021746
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	MMS19 nucleotide excision repair protein
Genome location	chr01:29103491..29104172
RNA-Seq Expression	PI0021746
Synteny	PI0021746
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0016226 - iron-sulfur cluster assembly (biological process) GO:0097428 - protein maturation by iron-sulfur cluster transfer (biological process) GO:0005634 - nucleus (cellular component) GO:0097361 - CIA complex (cellular component)
InterPro domains	IPR011989 - Armadillo-like helical IPR016024 - Armadillo-type fold IPR039920 - DNA repair/transcription protein MET18/MMS19

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008462416.1 PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis melo]

9.6e-26

96.97

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

XP_008462420.1 PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X5 [Cucumis melo]

9.6e-26

96.97

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

XP_038898520.1 MMS19 nucleotide excision repair protein homolog isoform X1 [Benincasa hispida]

3.3e-26

98.48

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

XP_038898521.1 MMS19 nucleotide excision repair protein homolog isoform X2 [Benincasa hispida]

3.3e-26

98.48

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

XP_038898522.1 MMS19 nucleotide excision repair protein homolog isoform X3 [Benincasa hispida]

3.3e-26

98.48

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7A1 MMS19 nucleotide excision repair protein

1.0e-25

95.45

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKR+VRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

A0A1S3CGY0 MMS19 nucleotide excision repair protein

4.6e-26

96.97

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

A0A1S3CGZ1 MMS19 nucleotide excision repair protein

4.6e-26

96.97

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

A0A1S3CHF7 MMS19 nucleotide excision repair protein

4.6e-26

96.97

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

A0A1S3CIF3 MMS19 nucleotide excision repair protein

4.6e-26

96.97

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
        MMLVRETAIQCLVAVSELPHA IYPMRRQVLH ISKALDDPKRAVRQEAVRCRQAWASIASRSLHF
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

SwissProt top hits

e value

%identity

Alignment

E1BP36 MMS19 nucleotide excision repair protein homolog

1.0e-06

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Query:  MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS
        M VR  A+QC+ A++ LP   + P + QV+ A++K LDD KR VR+EAV  R  W  + S
Subjt:  MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS

Q0V9L1 MMS19 nucleotide excision repair protein homolog

2.7e-07

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Query:  MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS
        M VR TA++C++A+++LP   + P ++QV+ A++K LDD KR VR+EAV  R  W  + S
Subjt:  MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS

Q0WVF8 MMS19 nucleotide excision repair protein homolog

3.1e-19

73.02

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Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRS
        +M+VRET+IQCLVA+ ELPH  IYP RR+VL AI K+LDDPKR VR+EA+RCRQAWASI S S
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRS

Q6DCF2 MMS19 nucleotide excision repair protein homolog

2.7e-07

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Query:  MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS
        M VR TA++C++A+++LP   + P ++QV+ A++K LDD KR VR+EAV  R  W  + S
Subjt:  MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS

Q9D071 MMS19 nucleotide excision repair protein homolog

4.6e-07

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Query:  MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS
        M VR  A+QC+ A++ LP + + P + QV+ A++K LDD KR VR+EAV  R  W  + S
Subjt:  MLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIAS

Arabidopsis top hits

e value

%identity

Alignment

AT5G48120.1 ARM repeat superfamily protein

2.2e-20

73.02

Show/hide

Query:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRS
        +M+VRET+IQCLVA+ ELPH  IYP RR+VL AI K+LDDPKR VR+EA+RCRQAWASI S S
Subjt:  MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRS

Sequences

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CDS sequence

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ATGATGCTCGTACGAGAAACTGCAATTCAGTGCCTTGTCGCTGTGTCTGAACTGCCCCATGCGACGATATACCCCATGAGAAGACAGGTACTGCACGCAATATCTAAAGC
TCTTGATGATCCAAAGAGAGCTGTTCGACAGGAAGCTGTCAGATGTCGACAAGCATGGGCATCAATTGCATCAAGAAGTCTTCATTTCTAA

mRNA sequence

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Protein sequence

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MMLVRETAIQCLVAVSELPHATIYPMRRQVLHAISKALDDPKRAVRQEAVRCRQAWASIASRSLHF

PI0021746 (gene) of Melon (PI 482460) v1 genome