; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0021761 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021761
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGlycine-rich RNA-binding protein, putative
Genome locationchr11:21733540..21735648
RNA-Seq ExpressionPI0021761
SyntenyPI0021761
Gene Ontology termsGO:0006096 - glycolytic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0008443 - phosphofructokinase activity (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034781.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]2.4e-6589.8Show/hide
Query:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDA
        MMSNTNTL+LLARKALTNIQTPIL+FRCFCSQSTSALSS PSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NENDA
Subjt:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDA

Query:  QCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS
        QCAKDAMDGKA   RPL+ISFAL+KVRGGPV +PRLSNI+NLVGRRS
Subjt:  QCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS

XP_008455929.1 PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Cucumis melo]7.3e-7590.12Show/hide
Query:  VYAIAETRSQAITNAMMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGR
        V+ I++TRSQAITNAMMSNTNTL+LLARKALTNIQTPIL+FRCFCSQSTSALSS PSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDKDSGR
Subjt:  VYAIAETRSQAITNAMMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGR

Query:  SRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS
        SRGFGFV+F NENDAQCAKDAMDGKAVLGRPL+ISFAL+KVRGGPV +PRLSNI+NLVGRRS
Subjt:  SRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS

XP_022986397.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]9.0e-6586.75Show/hide
Query:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQS----TSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
        MMSN N L+LLAR+ALTNIQTP+LSFRCFCSQS    +SA SS PSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
Subjt:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQS----TSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN

Query:  ENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS
        E+DAQ AKDAMDGKA+LGRPLRISFALDKVRGGPVV+PRLSNI+N++GRRS
Subjt:  ENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS

XP_023512965.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]7.6e-6486.09Show/hide
Query:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQ----STSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
        MMSNTNTL+ L R+ALTNIQTP+LSFRCFCSQ    S+SA SS PSAPNNKLFVAGLSWS+DERSLKDAFSS+GEVTEVRIMYDKDSGRSRGFGFVNFTN
Subjt:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQ----STSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN

Query:  ENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS
        E+DAQ AKDAMDGKA+LGRPLRISFALDKVRGGPVV+PRLSNI+N+ GRRS
Subjt:  ENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS

XP_031736490.1 glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]8.4e-7188.48Show/hide
Query:  MRFVYA-IAETRSQAITNAMMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDK
        M FV+  IA TRSQAITNA MSNTNT +LLARKALTNIQTP L FRCFCSQSTS LSS PS PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDK
Subjt:  MRFVYA-IAETRSQAITNAMMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDK

Query:  DSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRR
        DSGRSRGFGFVNF N NDAQCAKDAMDGKAVLGRPLRISFALDKVRG PVV+PRLSNI+NLVGRR
Subjt:  DSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRR

TrEMBL top hitse value%identityAlignment
A0A0A0LQB7 RRM domain-containing protein2.6e-6591.03Show/hide
Query:  MSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQ
        MSNTNT +LLARKALTNIQTP L FRCFCSQSTS LSS PS PNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNF N NDAQ
Subjt:  MSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQ

Query:  CAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRR
        CAKDAMDGKAVLGRPLRISFALDKVRG PVV+PRLSNI+NLVGRR
Subjt:  CAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRR

A0A1S3C2R4 glycine-rich RNA-binding protein 3, mitochondrial3.6e-7590.12Show/hide
Query:  VYAIAETRSQAITNAMMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGR
        V+ I++TRSQAITNAMMSNTNTL+LLARKALTNIQTPIL+FRCFCSQSTSALSS PSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDKDSGR
Subjt:  VYAIAETRSQAITNAMMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGR

Query:  SRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS
        SRGFGFV+F NENDAQCAKDAMDGKAVLGRPL+ISFAL+KVRGGPV +PRLSNI+NLVGRRS
Subjt:  SRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS

A0A5D3CH06 Glycine-rich RNA-binding protein 31.1e-6589.8Show/hide
Query:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDA
        MMSNTNTL+LLARKALTNIQTPIL+FRCFCSQSTSALSS PSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFV+F NENDA
Subjt:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDA

Query:  QCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS
        QCAKDAMDGKA   RPL+ISFAL+KVRGGPV +PRLSNI+NLVGRRS
Subjt:  QCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS

A0A6J1FYH8 glycine-rich RNA-binding protein 4, mitochondrial-like1.4e-6387.42Show/hide
Query:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQS----TSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
        MMSN N L+LLAR+ALTNIQTP+LSFRCFCSQS    +SA SS PSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
Subjt:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQS----TSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN

Query:  ENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS
        E+DAQ AKDAMDGKA+LGRPLRISFALDKVRGGPVVIPRLSNI N+ GRRS
Subjt:  ENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS

A0A6J1J7F1 glycine-rich RNA-binding protein 4, mitochondrial-like4.4e-6586.75Show/hide
Query:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQS----TSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
        MMSN N L+LLAR+ALTNIQTP+LSFRCFCSQS    +SA SS PSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN
Subjt:  MMSNTNTLVLLARKALTNIQTPILSFRCFCSQS----TSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTN

Query:  ENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS
        E+DAQ AKDAMDGKA+LGRPLRISFALDKVRGGPVV+PRLSNI+N++GRRS
Subjt:  ENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS

SwissProt top hitse value%identityAlignment
P98179 RNA-binding protein 31.0e-1545.98Show/hide
Query:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRG
        S+   KLFV GL+++ DE++L+D FSSFG ++EV ++ D+++ RSRGFGF+ FTN   A  A  AM+G+++ GR +R+  A    RG
Subjt:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRG

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial5.0e-1842.27Show/hide
Query:  STSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGG
        S S   +     ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+   A  A  A+DG+ + GR +++++A D+  GG
Subjt:  STSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial2.3e-1853.09Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDK
        ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A   MDGK + GR +R++ A ++
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial1.1e-1749.38Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDK
        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A   MDGK + GR +R++ A D+
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDK

W8E7I1 RNA-binding protein 36.1e-1647.13Show/hide
Query:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRG
        S+   KLFV GL+++ DER+L+D FSSFG ++EV ++ D+++ RSRGFGF+ FTN   A  A  AM+G+++ GR +R+  A    RG
Subjt:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRG

Arabidopsis top hitse value%identityAlignment
AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.7e-3864.12Show/hide
Query:  NTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKD
        N + LL R+     Q  I S   F  Q  ++ S+ PS   +KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFV+F  E DA  AKD
Subjt:  NTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKD

Query:  AMDGKAVLGRPLRISFALDKVRGGPVVIPRL
        AMDGK +LGRPLRISFAL++VRGGPVV+PRL
Subjt:  AMDGKAVLGRPLRISFALDKVRGGPVVIPRL

AT3G23830.1 glycine-rich RNA-binding protein 41.6e-1953.09Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDK
        ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A   MDGK + GR +R++ A ++
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDK

AT3G23830.2 glycine-rich RNA-binding protein 41.6e-1953.09Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDK
        ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ E+ A  A   MDGK + GR +R++ A ++
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDK

AT4G13850.4 glycine-rich RNA-binding protein 27.2e-2049.41Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGG
        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A   MDGK + GR +R++ A D+  GG
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGG

AT5G61030.1 glycine-rich RNA-binding protein 33.6e-1942.27Show/hide
Query:  STSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGG
        S S   +     ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+   A  A  A+DG+ + GR +++++A D+  GG
Subjt:  STSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTTGTATATGCAATAGCAGAAACTCGATCACAAGCAATAACCAATGCAATGATGAGCAACACGAACACCTTGGTACTGCTTGCCAGAAAAGCACTAACCAATAT
CCAAACTCCAATTCTTAGCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTGTCCTTCTGCACCAAACAATAAGCTCTTCGTAGCAGGGTTGTCTTGGT
CCATGGACGAGAGATCATTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTG
AACTTCACAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCGGTATTAGGGCGGCCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGG
ACCTGTTGTCATTCCTCGACTTTCAAACATCGACAACCTTGTGGGTCGAAGGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTTGTATATGCAATAGCAGAAACTCGATCACAAGCAATAACCAATGCAATGATGAGCAACACGAACACCTTGGTACTGCTTGCCAGAAAAGCACTAACCAATAT
CCAAACTCCAATTCTTAGCTTTCGTTGCTTCTGTTCTCAATCCACCTCCGCTCTCTCATCTTGTCCTTCTGCACCAAACAATAAGCTCTTCGTAGCAGGGTTGTCTTGGT
CCATGGACGAGAGATCATTGAAAGATGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGTTAGGATAATGTATGATAAAGACTCAGGTCGATCCAGAGGTTTCGGATTTGTG
AACTTCACAAATGAAAATGATGCACAGTGTGCAAAAGATGCAATGGATGGAAAGGCGGTATTAGGGCGGCCATTGAGGATAAGCTTTGCCCTTGACAAGGTCCGTGGAGG
ACCTGTTGTCATTCCTCGACTTTCAAACATCGACAACCTTGTGGGTCGAAGGTCTTGAAGCTCTTGATCTTTGACTTGGTTTTGCAGGTATGGAAACCAATAGTATGAAG
AACGTCAAATTAGTATTGTTTGATAATCACAGAGAAATACAATATCAATTTCTTTGTTTGTACGCTCCTATATCCAAATATTTGGAAGAAATGAGGGAACAAAATTCTTG
TAGCACTAATCATGATTTTTTTTCAAGTCATGATAGATAGTTTCCAATTTCTTTTATTAGAAATCTTGTTTTCTATCTTAGTAGTATCTTTGTCCAGTACATTAGGTATA
TGTGCTTTAATCTTATTGGAGTTTCTACTCAAGCACAATTTTAGTTCTCATACGACTCTAGTGGCATTTTTATTCGTTGGCCTTTGTTAATAATACCACATTCATATATA
TATATTCAACATCTGCACCCTATCTGACCTAAACCGAGCAGCGA
Protein sequenceShow/hide protein sequence
MRFVYAIAETRSQAITNAMMSNTNTLVLLARKALTNIQTPILSFRCFCSQSTSALSSCPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFV
NFTNENDAQCAKDAMDGKAVLGRPLRISFALDKVRGGPVVIPRLSNIDNLVGRRS