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PI0021785 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021785
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPolyprotein
Genome locationchr07:10067007..10068253
RNA-Seq ExpressionPI0021785
SyntenyPI0021785
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.1e-3772.66Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMD GFTTVTR  +RS GI I S TESSTPPRPS NL+RPS G+ QMRPPASP S  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQTVAPEKRFIPRSEIKTYFQKQV
        PTTYSQ V P+KRF+PR EIK+YFQK +
Subjt:  PTTYSQTVAPEKRFIPRSEIKTYFQKQV

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]1.1e-4059.79Show/hide
Query:  RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQTV
        RGR +STSSKG+RPSSS N  PSPMSADQYAMD GFTTVTRS++RSS IRI S TESSTPP+PS NL+RPSGG+ QMR P SP S  +SSTPPTTYSQ V
Subjt:  RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQTV

Query:  APEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSI
         P+KR                                               SKLLAALAQATTDADFQRLLST VNAS+SSKS SSSI
Subjt:  APEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSI

KAA0053156.1 hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa]1.9e-3760.12Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+RPSSS N APSPMS DQYAM  GFTT+T+SK+RSSGIRI S TES TPPRP ANL+RPSG + QMR P SPLS  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQTVAPEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKL
        PTTYSQ V P+KRF+PR EIK+YFQK        ++  +  +  +Q+ +++ + E+  D S L
Subjt:  PTTYSQTVAPEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKL

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]1.3e-5164.97Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+ PSSS N APSPMS DQYAMD G+TTV +S+++SSGI I S  ESSTPPRPS NL+ P G + QMR  ASP S  ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQTVAPEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSI
        PTTYSQ V P+K+F+PR EIK+YFQK +      ++  + +NG LQDIDQ+KNA+FLNDK K LAAL QAT DADFQRLLSTAVN S+SSK A S I
Subjt:  PTTYSQTVAPEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSI

TYK11076.1 hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa]5.9e-3973.44Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+RPSSS N APSPMSADQY MD GFTTV RS++RSS IR ES TESSTPPRP ANL+RPSG + QMRPPASP S  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQTVAPEKRFIPRSEIKTYFQKQV
        PTTYSQ V P+KRF+PR +IK+YFQK +
Subjt:  PTTYSQTVAPEKRFIPRSEIKTYFQKQV

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein5.4e-3872.66Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+RP SS N APSP+SADQYAMD GFTTVTR  +RS GI I S TESSTPPRPS NL+RPS G+ QMRPPASP S  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQTVAPEKRFIPRSEIKTYFQKQV
        PTTYSQ V P+KRF+PR EIK+YFQK +
Subjt:  PTTYSQTVAPEKRFIPRSEIKTYFQKQV

A0A5A7U8A0 Uncharacterized protein5.2e-4159.79Show/hide
Query:  RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQTV
        RGR +STSSKG+RPSSS N  PSPMSADQYAMD GFTTVTRS++RSS IRI S TESSTPP+PS NL+RPSGG+ QMR P SP S  +SSTPPTTYSQ V
Subjt:  RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQTV

Query:  APEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSI
         P+KR                                               SKLLAALAQATTDADFQRLLST VNAS+SSKS SSSI
Subjt:  APEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSI

A0A5A7UFZ9 Uncharacterized protein9.2e-3860.12Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+RPSSS N APSPMS DQYAM  GFTT+T+SK+RSSGIRI S TES TPPRP ANL+RPSG + QMR P SPLS  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQTVAPEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKL
        PTTYSQ V P+KRF+PR EIK+YFQK        ++  +  +  +Q+ +++ + E+  D S L
Subjt:  PTTYSQTVAPEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKL

A0A5D3BI61 Uncharacterized protein6.5e-5264.97Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+ PSSS N APSPMS DQYAMD G+TTV +S+++SSGI I S  ESSTPPRPS NL+ P G + QMR  ASP S  ESST 
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQTVAPEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSI
        PTTYSQ V P+K+F+PR EIK+YFQK +      ++  + +NG LQDIDQ+KNA+FLNDK K LAAL QAT DADFQRLLSTAVN S+SSK A S I
Subjt:  PTTYSQTVAPEKRFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSI

A0A5D3CKX1 Uncharacterized protein2.8e-3973.44Show/hide
Query:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP
        MSS +G  RGR +STSSKG+RPSSS N APSPMSADQY MD GFTTV RS++RSS IR ES TESSTPPRP ANL+RPSG + QMRPPASP S  ESSTP
Subjt:  MSSVRG--RGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTP

Query:  PTTYSQTVAPEKRFIPRSEIKTYFQKQV
        PTTYSQ V P+KRF+PR +IK+YFQK +
Subjt:  PTTYSQTVAPEKRFIPRSEIKTYFQKQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTTGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTTCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCGGCCTCTCCTTTGTCAAAATTGGAGTCATCAACTCCACCCACAACATACTCTCAGACCGTTGCACCAGAAAAA
CGGTTCATACCAAGGTCCGAGATCAAAACTTATTTTCAAAAGCAAGTGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGA
TCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATG
CCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCAGTGCGAGGCAGAGGAAGAGTAAGCTCTACCTCTTCAAAGGGCAGTCGCCCATCTTCTTCACAAAATCCTGCACCCTCACCTATGAGTGCAGATCAATATGC
AATGGATTTTGGGTTTACTACGGTAACCCGATCTAAAGCAAGATCGTCCGGCATACGGATTGAATCTTCCACGGAGTCTTCCACTCCACCTAGGCCTTCGGCCAACCTTG
TCCGTCCTTCTGGCGGAATAACCCAAATGAGGCCTCCGGCCTCTCCTTTGTCAAAATTGGAGTCATCAACTCCACCCACAACATACTCTCAGACCGTTGCACCAGAAAAA
CGGTTCATACCAAGGTCCGAGATCAAAACTTATTTTCAAAAGCAAGTGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGA
TCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATG
CCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATATAG
Protein sequenceShow/hide protein sequence
MSSVRGRGRVSSTSSKGSRPSSSQNPAPSPMSADQYAMDFGFTTVTRSKARSSGIRIESSTESSTPPRPSANLVRPSGGITQMRPPASPLSKLESSTPPTTYSQTVAPEK
RFIPRSEIKTYFQKQVHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSI