; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0021816 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021816
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr11:22080806..22081075
RNA-Seq ExpressionPI0021816
SyntenyPI0021816
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025506.1 transcription initiation factor TFIID subunit 2-like [Cucumis melo var. makuwa]2.0e-1455.68Show/hide
Query:  MVVARYMIDKFDGKPDFELWEA----------KIRALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL
        M V RY I+KFDGK  F LW+A          K++A+ DP KLP  MT EEK+TME A YG IVLNL+ NVL++VI KET+Y +W KL
Subjt:  MVVARYMIDKFDGKPDFELWEA----------KIRALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL

XP_038880370.1 uncharacterized protein LOC120072018 [Benincasa hispida]6.5e-1346.07Show/hide
Query:  MVVARYMIDKFDGKPDFELWEAKIR----------ALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKLN
        M   RY I+KFDGK DFEL +AKI+          A+ DP K P  ++  +K+T+EL  YGTI+LN+T ++L+Q++ + T+Y +WNKLN
Subjt:  MVVARYMIDKFDGKPDFELWEAKIR----------ALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKLN

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]3.8e-1347.19Show/hide
Query:  MVVARYMIDKFDGKPDFELWEAKIR----------ALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKLN
        M   RY I+KF+ K DFELW+AKI+          A+ DP K P I+   EK+T+E   YGTIVLN+  +VL+Q++ + T+Y +WNKLN
Subjt:  MVVARYMIDKFDGKPDFELWEAKIR----------ALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKLN

XP_038889933.1 uncharacterized protein LOC120079695 [Benincasa hispida]2.2e-1347.19Show/hide
Query:  MVVARYMIDKFDGKPDFELWEAKIR----------ALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKLN
        M   R+ I+KFDGK DFELW+AKI+          A+ D  K P   T  EK+ +E+  YGTIVLN+T NVL+Q++ ++T++ +WNKLN
Subjt:  MVVARYMIDKFDGKPDFELWEAKIR----------ALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKLN

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]3.5e-1450.56Show/hide
Query:  MVVARYMIDKFDGKPDFELWEAKIR----------ALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKLN
        M   RY I+KFD K DFELW+ KI+          A+ DP K P  +T  EK+T+E+   GTIVLN+T NVL+QVI + T+Y +WNKLN
Subjt:  MVVARYMIDKFDGKPDFELWEAKIR----------ALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKLN

TrEMBL top hitse value%identityAlignment
A0A1S4DV47 uncharacterized protein LOC1079906921.2e-0952.63Show/hide
Query:  MVVARYMIDKFDGKPDFELWEAKI----------RALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVI
        + VARY I+KFDGK DF LW+AKI          +AL DP KLP IM  E+ +TME A Y  IVLNL+ +VL+++I
Subjt:  MVVARYMIDKFDGKPDFELWEAKI----------RALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVI

A0A5A7TAZ3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-0840.91Show/hide
Query:  MVVARYMIDKFDGKPDFELWEAKIRA----------LDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL
        MV  ++ I++F+G  DF LW  +I+A          + DP  LPA M   +K++ME  TY  ++LN+T NVL+QVI + T+Y+I  KL
Subjt:  MVVARYMIDKFDGKPDFELWEAKIRA----------LDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-948.6e-1140.91Show/hide
Query:  MVVARYMIDKFDGKPDFELWEAKI----------RALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL
        M   ++ I+KFDG  DF LW  +I          +AL+DP +LPA +T  E++T+E   Y T+++N+T NVL+QVI++ T++  W KL
Subjt:  MVVARYMIDKFDGKPDFELWEAKI----------RALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass1.1e-0838.64Show/hide
Query:  MVVARYMIDKFDGKPDFELWEAKI----------RALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL
        M   ++ I+KFDG  DF L   +I          +AL+DP +L A +T  E++T+E   YGT+++N+T NVL+Q+I++ T++  W KL
Subjt:  MVVARYMIDKFDGKPDFELWEAKI----------RALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL

A0A5D3BQH4 Transcription initiation factor TFIID subunit 2-like9.8e-1555.68Show/hide
Query:  MVVARYMIDKFDGKPDFELWEA----------KIRALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL
        M V RY I+KFDGK  F LW+A          K++A+ DP KLP  MT EEK+TME A YG IVLNL+ NVL++VI KET+Y +W KL
Subjt:  MVVARYMIDKFDGKPDFELWEA----------KIRALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTGGCAAGGTATATGATTGATAAATTTGATGGAAAACCAGATTTTGAGTTATGGGAGGCCAAGATTCGAGCACTTGATGACCCTGTAAAGCTACCTGCTATAAT
GACCATCGAAGAAAAGAAAACCATGGAACTTGCAACCTATGGTACGATTGTCTTAAACCTCACTTATAACGTTCTAAAACAAGTTATAAAGAAAGAAACATCTTATAAAA
TTTGGAACAAGCTAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTGGCAAGGTATATGATTGATAAATTTGATGGAAAACCAGATTTTGAGTTATGGGAGGCCAAGATTCGAGCACTTGATGACCCTGTAAAGCTACCTGCTATAAT
GACCATCGAAGAAAAGAAAACCATGGAACTTGCAACCTATGGTACGATTGTCTTAAACCTCACTTATAACGTTCTAAAACAAGTTATAAAGAAAGAAACATCTTATAAAA
TTTGGAACAAGCTAAATTAG
Protein sequenceShow/hide protein sequence
MVVARYMIDKFDGKPDFELWEAKIRALDDPVKLPAIMTIEEKKTMELATYGTIVLNLTYNVLKQVIKKETSYKIWNKLN