; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0021833 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021833
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:12911244..12913560
RNA-Seq ExpressionPI0021833
SyntenyPI0021833
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032031.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.6e-1663.51Show/hide
Query:  KGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLS
        KGEV KV SC VC M GHHNDQC  +KE+S +G F RND QSN Y   WR HPNLR G Q  K +NTS SSS S
Subjt:  KGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLS

KAA0042324.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa]4.2e-1763.16Show/hide
Query:  MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQ
        +KG+VPKV SCGV  ++GHHNDQ  +LKE+S +  FRRND  SNTY   WR HPNLR GPQ  K +NTS SSS SQ
Subjt:  MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQ

KAA0066473.1 hypothetical protein E6C27_scaffold25G00080 [Cucumis melo var. makuwa]1.2e-1667.07Show/hide
Query:  IGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDFEKNLVWITEQTGNA
        +G FRRND QSNTY   WR HPNL  G Q  K +NTS SSS S   GTYL+EIISKLA SSNS KIDFEKNLV ++EQT N+
Subjt:  IGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDFEKNLVWITEQTGNA

KAE8647060.1 hypothetical protein Csa_022980 [Cucumis sativus]7.3e-3063.06Show/hide
Query:  MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDF
        +KGEVPKV SCGVC ++GHHNDQC ++KE+S +G +RRND QSN Y   WR  P+LR GPQ  K +NT PS+S S  +GTYL+EI+SKLAFSSN+FK DF
Subjt:  MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDF

Query:  EKNLVWITEQT
        EKNL  ++E T
Subjt:  EKNLVWITEQT

TYK27330.1 hypothetical protein E5676_scaffold394G00160 [Cucumis melo var. makuwa]1.2e-1667.07Show/hide
Query:  IGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDFEKNLVWITEQTGNA
        +G FRRND QSNTY   WR HPNL  G Q  K +NTS SSS S   GTYL+EIISKLA SSNS KIDFEKNLV ++EQT N+
Subjt:  IGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDFEKNLVWITEQTGNA

TrEMBL top hitse value%identityAlignment
A0A0A0KEQ8 Uncharacterized protein3.5e-3063.06Show/hide
Query:  MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDF
        +KGEVPKV SCGVC ++GHHNDQC ++KE+S +G +RRND QSN Y   WR  P+LR GPQ  K +NT PS+S S  +GTYL+EI+SKLAFSSN+FK DF
Subjt:  MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDF

Query:  EKNLVWITEQT
        EKNL  ++E T
Subjt:  EKNLVWITEQT

A0A5A7VEJ8 Uncharacterized protein5.9e-1767.07Show/hide
Query:  IGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDFEKNLVWITEQTGNA
        +G FRRND QSNTY   WR HPNL  G Q  K +NTS SSS S   GTYL+EIISKLA SSNS KIDFEKNLV ++EQT N+
Subjt:  IGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDFEKNLVWITEQTGNA

A0A5D3CKE7 Uncharacterized protein2.2e-1665.28Show/hide
Query:  GEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSL
        G  PKV SCGV DM+ HH+DQC +LK +S IG FRRND QSNTY   WR H NLR GPQ  K +NTS SSSL
Subjt:  GEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSL

A0A5D3CW21 Retrovirus-related Pol polyprotein from transposon 297 family2.0e-1763.16Show/hide
Query:  MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQ
        +KG+VPKV SCGV  ++GHHNDQ  +LKE+S +  FRRND  SNTY   WR HPNLR GPQ  K +NTS SSS SQ
Subjt:  MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQ

A0A5D3DVM3 Uncharacterized protein5.9e-1767.07Show/hide
Query:  IGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDFEKNLVWITEQTGNA
        +G FRRND QSNTY   WR HPNL  G Q  K +NTS SSS S   GTYL+EIISKLA SSNS KIDFEKNLV ++EQT N+
Subjt:  IGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDFEKNLVWITEQTGNA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGTGAGGTTCCTAAGGTAGCTTCCTGTGGAGTATGTGACATGATTGGCCACCACAACGATCAATGTTCTGACTTGAAAGAGCTAAGTACGATAGGCAACTTTAG
GAGGAATGACCCACAAAGCAACACGTATATCCCTCGATGGAGGTATCATCCCAATCTTAGATTGGGTCCACAAGGCCAAAAGTCGTCTAACACTTCTCCCTCTTCTTCCT
TATCGCAAAGGCAAGGTACCTATCTTCAAGAAATCATTTCTAAATTAGCCTTTAGTTCAAATAGCTTCAAAATCGATTTTGAAAAGAATCTAGTTTGGATTACTGAACAA
ACTGGTAATGCCTTGCCAGACGCCACTCACAGACGAAGCCGAGCCGAGGAGCTGCGCGAGCCAGCCGTCTGTGCTGTTCTTCTTTGCGAGCCATCCCGAGCCCGTGCGAA
GCCACACCGATCCGTCTCCTCCACGCGAAGCCGCGCCGCACCGATCTACCTTCTTTCATGCGAGACGATGCCGCACCGATCCGTCTCGCCCACGCGAAGCCGCGTCGCCG
TCTGCCTCTCTCTTGCGAAGCCGAGTCGCACCGCGCCGATCTGCCATCATTCACACGAAGCAAACAGTGCCGATCTACCTTCCTTCACGCGAGACGACGCCGTGCCGATC
CGTCTCCCCCACGTAAAGTCGCGCCGCCGTCTGCCTCCCTCTTGCGAAGCCGACCCGCACCGCGCTGATCTGCCATCATTCACGGGAAGCAAGCCGTGCTGCCTGCCGTC
CAAGCCGAGCCGCCGCACACTGCCTTTTTGTCAGTATGACCCAGTAGAGCTTTCGGGGCTGTTTGTGGTAAGGGAAAAACTTACCGAGAACTTATCAAGATTCGGTCCAA
AGGAAGAGTTCGCAGCAGAGAACGGCCTGAAGAAGGCAAACAAGGCTCGGGCAGCTCGCGGACAGGGACGGCCAGAAGTTGAGGTTGCTTGCGGAGCCGCAGGACCCCTA
AACAGAATGCGTGGAGTAGGGGAGGAGGCTAGGCGAGACAGAGAGGAACAACCAGAGACGAACCCCTCTACGAAGGGCGCGACGTTCGTCGAAAGTTGCGTTTGGCGAGG
AGAGGCTTCGCTGCACAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGTGAGGTTCCTAAGGTAGCTTCCTGTGGAGTATGTGACATGATTGGCCACCACAACGATCAATGTTCTGACTTGAAAGAGCTAAGTACGATAGGCAACTTTAG
GAGGAATGACCCACAAAGCAACACGTATATCCCTCGATGGAGGTATCATCCCAATCTTAGATTGGGTCCACAAGGCCAAAAGTCGTCTAACACTTCTCCCTCTTCTTCCT
TATCGCAAAGGCAAGGTACCTATCTTCAAGAAATCATTTCTAAATTAGCCTTTAGTTCAAATAGCTTCAAAATCGATTTTGAAAAGAATCTAGTTTGGATTACTGAACAA
ACTGGTAATGCCTTGCCAGACGCCACTCACAGACGAAGCCGAGCCGAGGAGCTGCGCGAGCCAGCCGTCTGTGCTGTTCTTCTTTGCGAGCCATCCCGAGCCCGTGCGAA
GCCACACCGATCCGTCTCCTCCACGCGAAGCCGCGCCGCACCGATCTACCTTCTTTCATGCGAGACGATGCCGCACCGATCCGTCTCGCCCACGCGAAGCCGCGTCGCCG
TCTGCCTCTCTCTTGCGAAGCCGAGTCGCACCGCGCCGATCTGCCATCATTCACACGAAGCAAACAGTGCCGATCTACCTTCCTTCACGCGAGACGACGCCGTGCCGATC
CGTCTCCCCCACGTAAAGTCGCGCCGCCGTCTGCCTCCCTCTTGCGAAGCCGACCCGCACCGCGCTGATCTGCCATCATTCACGGGAAGCAAGCCGTGCTGCCTGCCGTC
CAAGCCGAGCCGCCGCACACTGCCTTTTTGTCAGTATGACCCAGTAGAGCTTTCGGGGCTGTTTGTGGTAAGGGAAAAACTTACCGAGAACTTATCAAGATTCGGTCCAA
AGGAAGAGTTCGCAGCAGAGAACGGCCTGAAGAAGGCAAACAAGGCTCGGGCAGCTCGCGGACAGGGACGGCCAGAAGTTGAGGTTGCTTGCGGAGCCGCAGGACCCCTA
AACAGAATGCGTGGAGTAGGGGAGGAGGCTAGGCGAGACAGAGAGGAACAACCAGAGACGAACCCCTCTACGAAGGGCGCGACGTTCGTCGAAAGTTGCGTTTGGCGAGG
AGAGGCTTCGCTGCACAACTAG
Protein sequenceShow/hide protein sequence
MKGEVPKVASCGVCDMIGHHNDQCSDLKELSTIGNFRRNDPQSNTYIPRWRYHPNLRLGPQGQKSSNTSPSSSLSQRQGTYLQEIISKLAFSSNSFKIDFEKNLVWITEQ
TGNALPDATHRRSRAEELREPAVCAVLLCEPSRARAKPHRSVSSTRSRAAPIYLLSCETMPHRSVSPTRSRVAVCLSLAKPSRTAPICHHSHEANSADLPSFTRDDAVPI
RLPHVKSRRRLPPSCEADPHRADLPSFTGSKPCCLPSKPSRRTLPFCQYDPVELSGLFVVREKLTENLSRFGPKEEFAAENGLKKANKARAARGQGRPEVEVACGAAGPL
NRMRGVGEEARRDREEQPETNPSTKGATFVESCVWRGEASLHN