CuGenDBv2

Gene ID	PI0021834
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr03:12731539..12732333
RNA-Seq Expression	PI0021834
Synteny	PI0021834
Gene Ontology terms	NA
InterPro domains	IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

1.3e-86

65.15

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK++RF+F+  V+DEQFV G L+DL SGV VEVFCVY SNSN+ER +LW RLVEITS WS  GVV+ DF+AIRVH EA   S +  +ME+F+LAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV+G G LRR DR+LVN+ WL+TWP++ V+VLPWGISDH+ ILFYP  +   ++VSF FFNHWVED SF  VV+ +W R  GVS 
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQ
        LV L+RNLH LKP+L R FGRH + LSEEV   KEAMD  Q
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQ

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]

1.3e-92

64.39

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK+ RF+F   V+DE+FV G L+DL  GV VEV CVY SNS+ ER  LW+ L EITS WS LGVV+GDF+AIRVH EA G S +  +MEEFDLAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV+G G LRR DR+LVN++WL+ WP++R++VLPWGISDH  ILFYP  +   R+VSF FFNHWVE+ SF  VV+ +W R  GVSL
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF
        LVSL+RNLH LKP+L R FGRH + LSEEVH  KEAMD  Q +VER+P S   SR A L TE F
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF

KAA0059841.1 reverse transcriptase [Cucumis melo var. makuwa]

1.1e-93

65.53

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK++RF+F+  VVDEQFV G L+DL  GV VEVFCVY SNSN+ER +LW RLVE TS WS  GVV+GDF+AIRVH EA G S +  +ME+FDLAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV G G LRR DR+LVN+ WL+ WP++ V+VLPWGISDH  ILFYP  +   ++VSF FFNHWVED SF  VV+ +W R  GVS 
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF
        LVSL+RNLH LKP L R FGRH + LSEEVH  KEAMDR Q DVER+  S   SR A L TE F
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

1.3e-86

65.15

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK++RF+F+  V+DEQFV G L+DL SGV VEVFCVY SNSN+ER +LW RLVEITS WS  GVV+ DF+AIRVH EA   S +  +ME+F+LAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV+G G LRR DR+LVN+ WL+TWP++ V+VLPWGISDH+ ILFYP  +   ++VSF FFNHWVED SF  VV+ +W R  GVS 
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQ
        LV L+RNLH LKP+L R FGRH + LSEEV   KEAMD  Q
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQ

XP_008466769.1 PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]

1.1e-93

65.53

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK++RF+F+  VVDEQFV G L+DL  GV VEVFCVY SNSN+ER +LW RLVE TS WS  GVV+GDF+AIRVH EA G S +  +ME+FDLAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV G G LRR DR+LVN+ WL+ WP++ V+VLPWGISDH  ILFYP  +   ++VSF FFNHWVED SF  VV+ +W R  GVS 
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF
        LVSL+RNLH LKP L R FGRH + LSEEVH  KEAMDR Q DVER+  S   SR A L TE F
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRZ6 uncharacterized protein LOC103504100

5.5e-94

65.53

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK++RF+F+  VVDEQFV G L+DL  GV VEVFCVY SNSN+ER +LW RLVE TS WS  GVV+GDF+AIRVH EA G S +  +ME+FDLAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV G G LRR DR+LVN+ WL+ WP++ V+VLPWGISDH  ILFYP  +   ++VSF FFNHWVED SF  VV+ +W R  GVS 
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF
        LVSL+RNLH LKP L R FGRH + LSEEVH  KEAMDR Q DVER+  S   SR A L TE F
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF

A0A5A7SPE5 Reverse transcriptase domain-containing protein

6.5e-87

65.15

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK++RF+F+  V+DEQFV G L+DL SGV VEVFCVY SNSN+ER +LW RLVEITS WS  GVV+ DF+AIRVH EA   S +  +ME+F+LAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV+G G LRR DR+LVN+ WL+TWP++ V+VLPWGISDH+ ILFYP  +   ++VSF FFNHWVED SF  VV+ +W R  GVS 
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQ
        LV L+RNLH LKP+L R FGRH + LSEEV   KEAMD  Q
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQ

A0A5A7TZS0 Reverse transcriptase domain-containing protein

6.1e-93

64.39

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK+ RF+F   V+DE+FV G L+DL  GV VEV CVY SNS+ ER  LW+ L EITS WS LGVV+GDF+AIRVH EA G S +  +MEEFDLAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV+G G LRR DR+LVN++WL+ WP++R++VLPWGISDH  ILFYP  +   R+VSF FFNHWVE+ SF  VV+ +W R  GVSL
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF
        LVSL+RNLH LKP+L R FGRH + LSEEVH  KEAMD  Q +VER+P S   SR A L TE F
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF

A0A5A7V275 Reverse transcriptase

5.5e-94

65.53

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK++RF+F+  VVDEQFV G L+DL  GV VEVFCVY SNSN+ER +LW RLVE TS WS  GVV+GDF+AIRVH EA G S +  +ME+FDLAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV G G LRR DR+LVN+ WL+ WP++ V+VLPWGISDH  ILFYP  +   ++VSF FFNHWVED SF  VV+ +W R  GVS 
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF
        LVSL+RNLH LKP L R FGRH + LSEEVH  KEAMDR Q DVER+  S   SR A L TE F
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF

A0A5D3DXE4 Reverse transcriptase domain-containing protein

6.5e-87

65.15

Show/hide

Query:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN
        MWK++RF+F+  V+DEQFV G L+DL SGV VEVFCVY SNSN+ER +LW RLVEITS WS  GVV+ DF+AIRVH EA   S +  +ME+F+LAIR+A+
Subjt:  MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREAN

Query:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL
        LVEPSVQGN FTWTSKV+G G LRR DR+LVN+ WL+TWP++ V+VLPWGISDH+ ILFYP  +   ++VSF FFNHWVED SF  VV+ +W R  GVS 
Subjt:  LVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSL

Query:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQ
        LV L+RNLH LKP+L R FGRH + LSEEV   KEAMD  Q
Subjt:  LVSLIRNLHDLKPVLCRHFGRHTRGLSEEVHSTKEAMDRVQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G40390.1 DNAse I-like superfamily protein

9.4e-14

26.26

Show/hide

Query:  NSNVERHVLWQRLVEITSGWSILG---VVVGDF---SAIRVHYEACGESLVPDDMEEFDLAIREANLVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQ
        N+  ER  LW  +  +++   +     +VVGDF   +++  HY     ++    +E+    +R+++LV+   +G  +TW++  +    LR+ DR +VN  
Subjt:  NSNVERHVLWQRLVEITSGWSILG---VVVGDF---SAIRVHYEACGESLVPDDMEEFDLAIREANLVEPSVQGNRFTWTSKVRGLGWLRRFDRILVNEQ

Query:  WLATWPSLRVSVLPWGISDHFSILFY----PGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGV-SLLVSLIRNLHDLKPVLCRHFGRHTRGLS
        WLAT+P+      P   SDH + +      P + +++   SF +F+       F + + + W + + V S + SL   L + K   CR  G + RG S
Subjt:  WLATWPSLRVSVLPWGISDHFSILFY----PGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGV-SLLVSLIRNLHDLKPVLCRHFGRHTRGLS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGGAAGCGGGATAGATTTGCTTTTACTCCTAGTGTGGTGGATGAGCAATTTGTTTATGGTGTGCTTTCTGATCTGTATTCTGGTGTTACTGTAGAGGTGTTTTGTGT
TTATGTCTCTAACAGTAACGTGGAGCGTCATGTGCTTTGGCAGAGGTTAGTTGAGATCACATCTGGATGGTCGATTCTGGGGGTTGTCGTGGGTGACTTTAGTGCTATTC
GCGTGCACTATGAAGCTTGTGGTGAGAGTCTGGTTCCTGATGATATGGAGGAGTTTGATCTTGCTATTCGTGAGGCTAACTTGGTTGAGCCATCTGTTCAGGGAAACCGG
TTCACTTGGACGAGTAAGGTGCGTGGTTTAGGGTGGTTGCGTCGGTTTGACCGTATTTTGGTTAATGAGCAGTGGTTAGCTACTTGGCCTAGTTTGCGTGTTTCAGTTCT
GCCTTGGGGGATTTCTGATCATTTCTCTATTTTATTCTATCCTGGTGTTGAGCAGCGTAGGCGCATTGTGTCGTTTCATTTCTTTAACCATTGGGTAGAGGATACTTCAT
TTAGTAATGTGGTATCTTCGGTTTGGGTGAGAAGGTTGGGTGTTTCTCTGTTAGTGAGTCTTATAAGGAATTTGCATGACCTTAAGCCTGTGTTGTGTAGACATTTTGGT
AGGCATACCAGGGGCCTTAGTGAGGAGGTGCACTCTACTAAAGAGGCTATGGATAGGGTCCAATGTGACGTTGAGCGGGATCCTGGGTCTATTGAGAGGAGTCGTCTTGC
TCGGCTTCTGACTGAGGCTTTTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MWKRDRFAFTPSVVDEQFVYGVLSDLYSGVTVEVFCVYVSNSNVERHVLWQRLVEITSGWSILGVVVGDFSAIRVHYEACGESLVPDDMEEFDLAIREANLVEPSVQGNR
FTWTSKVRGLGWLRRFDRILVNEQWLATWPSLRVSVLPWGISDHFSILFYPGVEQRRRIVSFHFFNHWVEDTSFSNVVSSVWVRRLGVSLLVSLIRNLHDLKPVLCRHFG
RHTRGLSEEVHSTKEAMDRVQCDVERDPGSIERSRLARLLTEAF

PI0021834 (gene) of Melon (PI 482460) v1 genome