CuGenDBv2

Gene ID	PI0021857
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L20, chloroplastic
Genome location	tig00003626:1032141..1032548
RNA-Seq Expression	PI0021857
Synteny	PI0021857
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM88886.1 ribosomal protein L20 [Lagenaria siceraria]

1.3e-40

97.87

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQ LLN+
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

AHM91187.1 ribosomal protein L20 [Lagenaria siceraria]

1.3e-40

97.87

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQ LLN+
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

YP_004841806.1 ribosomal protein L20 [Cucumis melo subsp. melo]

6.9e-45

79.26

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQ LLN       
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------

Query:  ------------------QDSKESSGMLKMEFSGE
                          +D KESSGMLKMEFSGE
Subjt:  ------------------QDSKESSGMLKMEFSGE

YP_009317409.1 ribosomal protein L20 [Coccinia grandis]

1.3e-40

97.87

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQ LLN+
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

YP_009752182.1 ribosomal protein L20 [Linnaeosicyos amara]

3.2e-42

77.27

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDR RQKRNFR+LWI RINAVIR NKVDYSYSRFIHNLYKRQ LLN       
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------

Query:  ---------------QDSKESSGMLKMEFSGE
                       +D +ESSGMLKMEFSGE
Subjt:  ---------------QDSKESSGMLKMEFSGE

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU28 50S ribosomal protein L20, chloroplastic

3.3e-45

79.26

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQ LLN       
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------

Query:  ------------------QDSKESSGMLKMEFSGE
                          +D KESSGMLKMEFSGE
Subjt:  ------------------QDSKESSGMLKMEFSGE

A0A249RY24 50S ribosomal protein L20, chloroplastic

3.3e-45

79.26

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQ LLN       
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------

Query:  ------------------QDSKESSGMLKMEFSGE
                          +D KESSGMLKMEFSGE
Subjt:  ------------------QDSKESSGMLKMEFSGE

A0A249RZ58 50S ribosomal protein L20, chloroplastic

3.3e-45

79.26

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQ LLN       
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------

Query:  ------------------QDSKESSGMLKMEFSGE
                          +D KESSGMLKMEFSGE
Subjt:  ------------------QDSKESSGMLKMEFSGE

A0A249RZK5 50S ribosomal protein L20, chloroplastic

3.3e-45

79.26

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQ LLN       
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------

Query:  ------------------QDSKESSGMLKMEFSGE
                          +D KESSGMLKMEFSGE
Subjt:  ------------------QDSKESSGMLKMEFSGE

A0A286NG26 50S ribosomal protein L20, chloroplastic

3.3e-45

79.26

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQ LLN       
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLN-------

Query:  ------------------QDSKESSGMLKMEFSGE
                          +D KESSGMLKMEFSGE
Subjt:  ------------------QDSKESSGMLKMEFSGE

SwissProt top hits

e value

%identity

Alignment

A9L9B9 50S ribosomal protein L20, chloroplastic

1.9e-37

85.11

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        MTR+KRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQK+RAL SAYRDRGRQKR+FR+LWI RINAV R N+V YSY R IHNLYKRQ LLN+
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

B1A958 50S ribosomal protein L20, chloroplastic

7.2e-37

84.04

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQ+IRAL SA+RDRGR+KR+FR+LWI RINAVIR + V YSY+RFIHNLYK+Q LLN+
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

Q09G23 50S ribosomal protein L20, chloroplastic

1.9e-37

85.11

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        MTRI+RGYIARRRRTKIRLFAS+FRGAHSRLTRT TQQK+RAL SA+RDRGRQKRNFR+LWI RINAVIR NKV YSYSR IH+LYKRQ LLN+
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

Q4VZJ4 50S ribosomal protein L20, chloroplastic

6.7e-43

96.81

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSN VDYSYSRFIHNLYKRQ LLN+
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

Q7FNS5 50S ribosomal protein L20, chloroplastic

1.0e-35

84.04

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+LWI RINAVIR   V YSYSR IH+LYKRQ LLN+
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

1.4e-06

39.51

Show/hide

Query:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + V  +Y  FIH L K    LN+
Subjt:  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

ATCG00660.1 ribosomal protein L20

3.1e-35

78.72

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Query:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ
        MTRIKRGYIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+LWI RINAVI    V YSY+ FIHNLYK+Q LLN+
Subjt:  MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQ

Sequences

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CDS sequence

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ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCA
ACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGG
TAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTCCTTCTTAATCAAGATTCGAAAGAATCCAGCGGAATGCTTAAAATGGAGTTCTCTGGAGAA
TGA

mRNA sequence

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Protein sequence

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MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQFLLNQDSKESSGMLKMEFSGE

PI0021857 (gene) of Melon (PI 482460) v1 genome