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PI0021867 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021867
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:18461976..18462671
RNA-Seq ExpressionPI0021867
SyntenyPI0021867
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046557.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-1784.13Show/hide
Query:  VSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        +SQLASTVSKL+SKGKL SQ DVANL  P+KDKAKDEELLEIFKKVEINL LL+AVQQIP+YA
Subjt:  VSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

KAA0059717.1 uncharacterized protein E6C27_scaffold54G001800 [Cucumis melo var. makuwa]1.2e-0962.86Show/hide
Query:  LESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        + SL++Q+SQLAS VSKL+SK        +  L  P  DKAKDEEL EIFKKVEINL LL+AVQQIP YA
Subjt:  LESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-0945.88Show/hide
Query:  ESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTL----------------PKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        + +  Q++QL + +SK+D KGKL +QPD AN++                  KK+  K+EELLEIF+K +INL LLNA+QQ+PRYA
Subjt:  ESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTL----------------PKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

TYK11282.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-0950.72Show/hide
Query:  ESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        + +  Q++QL + +SK+D KGKL +QP +  L   KK+  K+EELLE+F+KV+INL  L+A+QQ+PRYA
Subjt:  ESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

TYK28702.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-1784.13Show/hide
Query:  VSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        +SQLASTVSKL+SKGKL SQ DVANL  P+KDKAKDEELLEIFKKVEINL LL+AVQQIP+YA
Subjt:  VSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

TrEMBL top hitse value%identityAlignment
A0A5A7TXB3 Reverse transcriptase3.8e-1784.13Show/hide
Query:  VSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        +SQLASTVSKL+SKGKL SQ DVANL  P+KDKAKDEELLEIFKKVEINL LL+AVQQIP+YA
Subjt:  VSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

A0A5A7UYJ3 Uncharacterized protein6.0e-1062.86Show/hide
Query:  LESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        + SL++Q+SQLAS VSKL+SK        +  L  P  DKAKDEEL EIFKKVEINL LL+AVQQIP YA
Subjt:  LESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

A0A5A7V0Q7 Retrotransposon gag protein1.7e-0945.88Show/hide
Query:  ESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTL----------------PKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        + +  Q++QL + +SK+D KGKL +QPD AN++                  KK+  K+EELLEIF+K +INL LLNA+QQ+PRYA
Subjt:  ESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTL----------------PKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

A0A5D3CJ21 Retrotransposon gag protein1.3e-0950.72Show/hide
Query:  ESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        + +  Q++QL + +SK+D KGKL +QP +  L   KK+  K+EELLE+F+KV+INL  L+A+QQ+PRYA
Subjt:  ESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

A0A5D3DYP4 Reverse transcriptase3.8e-1784.13Show/hide
Query:  VSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA
        +SQLASTVSKL+SKGKL SQ DVANL  P+KDKAKDEELLEIFKKVEINL LL+AVQQIP+YA
Subjt:  VSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTCACTTACTCATTTGATGGAAATTCCCTGTGTTCGACCCTGACCTTGCTAGGAAACCTCTTGCTCCACTTACACTTGGATGAGCAAGAGGAAAACTTGAATAA
ACAAGGGCTGGAAAGCTTGAGTAACCAAGTTTCTCAACTTGCTTCAACGGTGAGTAAGCTTGACTCAAAGGGAAAACTTCGCTCACAACCCGATGTAGCAAATTTAACTC
TACCAAAGAAGGACAAGGCCAAAGATGAGGAACTTCTTGAAATTTTCAAGAAGGTGGAGATTAATCTTTCCTTACTCAATGCAGTGCAACAAATCCCGCGATATGCCATG
TAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTTCACTTACTCATTTGATGGAAATTCCCTGTGTTCGACCCTGACCTTGCTAGGAAACCTCTTGCTCCACTTACACTTGGATGAGCAAGAGGAAAACTTGAATAA
ACAAGGGCTGGAAAGCTTGAGTAACCAAGTTTCTCAACTTGCTTCAACGGTGAGTAAGCTTGACTCAAAGGGAAAACTTCGCTCACAACCCGATGTAGCAAATTTAACTC
TACCAAAGAAGGACAAGGCCAAAGATGAGGAACTTCTTGAAATTTTCAAGAAGGTGGAGATTAATCTTTCCTTACTCAATGCAGTGCAACAAATCCCGCGATATGCCATG
TAA
Protein sequenceShow/hide protein sequence
MHFTYSFDGNSLCSTLTLLGNLLLHLHLDEQEENLNKQGLESLSNQVSQLASTVSKLDSKGKLRSQPDVANLTLPKKDKAKDEELLEIFKKVEINLSLLNAVQQIPRYAM