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PI0021868 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021868
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
Genome locationchr01:2190969..2192854
RNA-Seq ExpressionPI0021868
SyntenyPI0021868
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571702.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]7.3e-1182Show/hide
Query:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
        MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Subjt:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
KAG7011427.1 Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma]7.3e-1182Show/hide
Query:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
        MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Subjt:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
XP_022963528.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]7.3e-1182Show/hide
Query:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
        MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Subjt:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
XP_022963530.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita moschata]7.3e-1182Show/hide
Query:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
        MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Subjt:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
XP_023553730.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo]7.3e-1182Show/hide
Query:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
        MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Subjt:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
TrEMBL top hitse value%identityAlignment
A0A5D3C6P8 Mediator of RNA polymerase II transcription subunit 15a6.2e-0845.83Show/hide
Query:  QPPMGTS-----------LPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQNVMDQLQVGSQAPGSLLQSQNVMDLQKQLHHSQRALPETSS
        QPP  TS           L S+  + S  PL       ++ +  Q Q  +   S  +  ++ VG QAPGSLLQSQNVMD QKQL+HSQRALPETSS
Subjt:  QPPMGTS-----------LPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQNVMDQLQVGSQAPGSLLQSQNVMDLQKQLHHSQRALPETSS
A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X13.5e-1182Show/hide
Query:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
        MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Subjt:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
A0A6J1HI99 mediator of RNA polymerase II transcription subunit 15a-like isoform X23.5e-1182Show/hide
Query:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
        MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQS N
Subjt:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
A0A6J1HR60 mediator of RNA polymerase II transcription subunit 15a-like isoform X11.3e-1080Show/hide
Query:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
        MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQ  N
Subjt:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
A0A6J1HVE4 mediator of RNA polymerase II transcription subunit 15a-like isoform X21.3e-1080Show/hide
Query:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
        MET SQ PMGTSLPSNP+VPSNKPLD A QSM+ QVL+QGQSISVPQ  N
Subjt:  METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQN
SwissProt top hitse value%identityAlignment
F4I171 Mediator of RNA polymerase II transcription subunit 15a5.2e-0443.94Show/hide
Query:  QSMKLQVLSQGQSISVPQSQNVMDQ-----LQVGSQAPGSLLQSQNVMDLQKQLHHSQRALPETSS
        Q M  Q+ S  Q + + Q  N++ Q     LQ   Q  GSLL  QNV+D Q+QL+ SQR LPE  S
Subjt:  QSMKLQVLSQGQSISVPQSQNVMDQ-----LQVGSQAPGSLLQSQNVMDLQKQLHHSQRALPETSS
Arabidopsis top hitse value%identityAlignment
AT1G15780.1 unknown protein3.7e-0543.94Show/hide
Query:  QSMKLQVLSQGQSISVPQSQNVMDQ-----LQVGSQAPGSLLQSQNVMDLQKQLHHSQRALPETSS
        Q M  Q+ S  Q + + Q  N++ Q     LQ   Q  GSLL  QNV+D Q+QL+ SQR LPE  S
Subjt:  QSMKLQVLSQGQSISVPQSQNVMDQ-----LQVGSQAPGSLLQSQNVMDLQKQLHHSQRALPETSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACCATATCTCAGCCCCCTATGGGGACTTCGTTACCATCCAATCCTGTGGTGCCTAGCAATAAGCCTCTGGATTTTGCATTACAAAGCATGAAGCTCCAAGTTCT
AAGCCAAGGGCAATCAATTTCTGTTCCTCAGTCACAAAATGTAATGGATCAGCTTCAAGTTGGAAGTCAAGCACCGGGCTCCTTGCTTCAATCACAAAATGTAATGGATC
TGCAAAAGCAGTTGCATCATTCTCAAAGAGCTCTTCCAGAGACATCTTCAAAGCCTTATCATTGA
mRNA sequenceShow/hide mRNA sequence
AAAACTGACGCCCTCCTCTTTCTTTGCATGGCTTCCTAAATCGTCTTTCAAATTAAACAATTGCCGAATCAGTTCTTCCCGATTACCATCTCCGCCGCCAATTTCTGGCC
TTCATTCAGCTCAGCCCACTCCTTGCGAATGGATACAAATAGTTGGAGACCTACTCAAAGTGGAATCGAGGCGGGGGATTGAGCTTCCAATTGCACCCCGATTTTCGACA
ACACGTCAACGAAATAACGAAGTCATTGAAGAGGCAACTTCTTGTTTCTGATCAAGAAGGATTGAGTGAGCTACGAAAAATTCTCGTAAGGTTTGAGGAAAAGATTTACA
TCGCCTCTATCAATCAGTTTGATTACCTAAGGAAAACATTTCTGAAGATCCTTACCATGGAAACCATATCTCAGCCCCCTATGGGGACTTCGTTACCATCCAATCCTGTG
GTGCCTAGCAATAAGCCTCTGGATTTTGCATTACAAAGCATGAAGCTCCAAGTTCTAAGCCAAGGGCAATCAATTTCTGTTCCTCAGTCACAAAATGTAATGGATCAGCT
TCAAGTTGGAAGTCAAGCACCGGGCTCCTTGCTTCAATCACAAAATGTAATGGATCTGCAAAAGCAGTTGCATCATTCTCAAAGAGCTCTTCCAGAGACATCTTCAAAGC
CTTATCATTGA
Protein sequenceShow/hide protein sequence
METISQPPMGTSLPSNPVVPSNKPLDFALQSMKLQVLSQGQSISVPQSQNVMDQLQVGSQAPGSLLQSQNVMDLQKQLHHSQRALPETSSKPYH