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PI0021879 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021879
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr05:9575808..9576269
RNA-Seq ExpressionPI0021879
SyntenyPI0021879
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-5673.2Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWK  LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS
        MFGQPSIQI+ E IKYVYN  MKE QSVREHVLDM+V FN+AE N  + DE+S
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-6079.08Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTK N+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS
        MFGQPSIQI+ E IKYVYNARMKEGQSVREHVL M+V FNVAE N AI DE+S
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-5776.47Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WK  LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TK N+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS
        +F QPSIQI+ E IKYVYNA MKEGQSVREH LDM+V FNVAE NGA+IDE+S
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-6079.08Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTK N+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS
        MFGQPSIQI+ E IKYVYNARMKEGQSVREHVL M+V FNVAE N AI DE+S
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]2.7e-5570.59Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MS+SIIALL  +KL G+NY  WK NLN ILVIDDLRFVL E+CP +P+ NA+  VR+AYDRW K N+KA+VYILAS+SDVL+KKHE  VT ++IMDSLQ 
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS
        MFGQPS+Q RHE +K+VYN+RMKEG SVREHVL++MV FNVAE+NG +IDEQS
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

TrEMBL top hitse value%identityAlignment
A0A5A7VA67 Gag/pol protein6.0e-6179.08Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTK N+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS
        MFGQPSIQI+ E IKYVYNARMKEGQSVREHVL M+V FNVAE N AI DE+S
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

A0A5D3BM47 Gag/pol protein1.1e-5776.47Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WK  LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TK N+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS
        +F QPSIQI+ E IKYVYNA MKEGQSVREH LDM+V FNVAE NGA+IDE+S
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

A0A5D3D0D9 Gag/pol protein6.0e-6179.08Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTK N+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS
        MFGQPSIQI+ E IKYVYNARMKEGQSVREHVL M+V FNVAE N AI DE+S
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

A0A5D3DIM3 Gag/pol protein1.3e-5574.34Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKL LNMILVI DLRFVL+EECPP P +NASQ+V+D YD WTK N+KAR+YILASMS++LSKKH  MVTARQIM SL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQ
        MFGQ SIQI+ E IKYVYNARMKEGQ VRE VL+M+V FN+A+ N A+ DE+
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQ

A0A5D3DQJ2 Gag/pol protein2.6e-5673.2Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWK  LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS
        MFGQPSIQI+ E IKYVYN  MKE QSVREHVLDM+V FN+AE N  + DE+S
Subjt:  MFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATTGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCATATGATCGCTGGACAAAGGTTAATGAAAAGGCCCGAGTCTACATCT
TGGCCAGTATGTCTGACGTATTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATTCGG
CACGAGACTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGC
GATCATTGACGAGCAAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATTGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCATATGATCGCTGGACAAAGGTTAATGAAAAGGCCCGAGTCTACATCT
TGGCCAGTATGTCTGACGTATTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATTCGG
CACGAGACTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGC
GATCATTGACGAGCAAAGTTAG
Protein sequenceShow/hide protein sequence
MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIR
HETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS