CuGenDBv2

Gene ID	PI0021881
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr10:2708505..2709170
RNA-Seq Expression	PI0021881
Synteny	PI0021881
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]

1.3e-71

62.33

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Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RK+ HSPTRRSKSKGPAVREHV+TRLTNLE+G++DVQ +VGRLS+NF+ELVQENA+IT+ AKE++ D+GR+F+++L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        +AS    LKA +EGEL  LH+K  + + ++D LC ECRSKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L DAAQLWWRRKY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]

3.0e-71

62.33

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Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RK+ HSPTRRSKSKGPAVREHV+TRLTNLE+G++DVQ +VGRLS+ F+ELVQENA+IT+ AKE++ D+GR+F+K+L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        +AS    LKA +EGEL +LH+K  + + ++D LC ECRSKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L DAAQLWWRRKY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]

3.9e-71

61.88

Show/hide

Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RKK HSPTRRSKSKGP VREHV+TRLTNLEKG++DVQ +VGRLS+NF+ELVQENA+IT+ AKE++ D+GR+F+K+L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        +AS    LKA +EGEL +LH+K  + + ++D LC EC SKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L D AQLWWR KY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]

3.9e-71

61.88

Show/hide

Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RK+ HSPTRRSKSKGPAVREHV+TRLTNLE+G++DVQ +VGRLS+NF+ELVQENA+IT+ AKE++ D+GR+F+++L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        + S    LKA +EGEL  LH+K  + + ++D LC ECRSKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L DAAQLWWRRKY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

TYK18079.1 uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]

3.9e-71

61.88

Show/hide

Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RKK HSPTRRSKSKGP VREHV+TRLTNLEKG++DVQ +VGRLS+NF+ELVQENA+IT+ AKE++ D+GR+F+K+L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        +AS    LKA +EGEL +LH+K  + + ++D LC EC SKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L D AQLWWR KY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TAA5 Uncharacterized protein

6.4e-72

62.33

Show/hide

Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RK+ HSPTRRSKSKGPAVREHV+TRLTNLE+G++DVQ +VGRLS+NF+ELVQENA+IT+ AKE++ D+GR+F+++L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        +AS    LKA +EGEL  LH+K  + + ++D LC ECRSKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L DAAQLWWRRKY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

A0A5A7TFP3 Retrotrans_gag domain-containing protein

1.9e-71

61.88

Show/hide

Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RKK HSPTRRSKSKGP VREHV+TRLTNLEKG++DVQ +VGRLS+NF+ELVQENA+IT+ AKE++ D+GR+F+K+L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        +AS    LKA +EGEL +LH+K  + + ++D LC EC SKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L D AQLWWR KY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

A0A5A7THC0 Reverse transcriptase domain-containing protein

1.4e-71

62.33

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Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RK+ HSPTRRSKSKGPAVREHV+TRLTNLE+G++DVQ +VGRLS+ F+ELVQENA+IT+ AKE++ D+GR+F+K+L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        +AS    LKA +EGEL +LH+K  + + ++D LC ECRSKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L DAAQLWWRRKY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

A0A5A7VEX8 Polyprotein

1.9e-71

61.88

Show/hide

Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RK+ HSPTRRSKSKGPAVREHV+TRLTNLE+G++DVQ +VGRLS+NF+ELVQENA+IT+ AKE++ D+GR+F+++L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        + S    LKA +EGEL  LH+K  + + ++D LC ECRSKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L DAAQLWWRRKY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

A0A5D3D3V4 Retrotrans_gag domain-containing protein

1.9e-71

61.88

Show/hide

Query:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE
        MS EE H SP EQVIEGPVTR RKK HSPTRRSKSKGP VREHV+TRLTNLEKG++DVQ +VGRLS+NF+ELVQENA+IT+ AKE++ D+GR+F+K+L E
Subjt:  MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNE

Query:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW
        +AS    LKA +EGEL +LH+K  + + ++D LC EC SKH+   + ST   P   GT  IKVPKP++YNG RNAT + N L+GLERY+ ALG+ DD   
Subjt:  VAS---ALKALIEGELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVW

Query:  VNNARTYLWDAAQLWWRRKYLER
        +N+A T+L D AQLWWR KY ++
Subjt:  VNNARTYLWDAAQLWWRRKYLER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCCACTGAGGAAAGGCACGTATCACCCGAGGAACAAGTCATTGAAGGGCCTGTTACTCGGAAAAGAAAAAAGTGTCACTCTCCAACTCGACGCTCTAAGTCCAAAGG
ACCAGCGGTAAGGGAGCATGTCAACACTCGCCTTACCAACCTAGAGAAGGGCTTGAAGGATGTTCAGTTCTCGGTTGGTAGGCTGAGTGATAACTTTGACGAACTAGTCC
AGGAGAATGCCAAAATTACTACTTCTGCCAAGGAGCTCGTTGGGGATCTTGGACGGTCATTCAGAAAGAAACTAAATGAAGTGGCATCGGCCTTAAAGGCTCTCATCGAA
GGTGAGTTACGTGAACTCCACTCTAAATACAATACTCTTGATGCCAAGATAGATACTCTTTGTTCCGAATGTCGTTCCAAGCATATCACTGGCACCAGCACTTCAACCGG
TAACCAACCTGCTGCGCTAGGCACTTATGCCATCAAAGTGCCCAAACCTAATATTTACAATGGGGCAAGAAATGCCACAGACATAGGGAACTGCCTCTATGGCCTAGAGC
GTTACTATGATGCCCTAGGTATTGTTGATGATGGAGTCTGGGTTAACAATGCCCGAACATATCTATGGGATGCTGCTCAGTTATGGTGGCGACGTAAATACCTTGAACGA
GAGTAG

mRNA sequence

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Protein sequence

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MSTEERHVSPEEQVIEGPVTRKRKKCHSPTRRSKSKGPAVREHVNTRLTNLEKGLKDVQFSVGRLSDNFDELVQENAKITTSAKELVGDLGRSFRKKLNEVASALKALIE
GELRELHSKYNTLDAKIDTLCSECRSKHITGTSTSTGNQPAALGTYAIKVPKPNIYNGARNATDIGNCLYGLERYYDALGIVDDGVWVNNARTYLWDAAQLWWRRKYLER
E

PI0021881 (gene) of Melon (PI 482460) v1 genome