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PI0021885 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021885
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L18
Genome locationchr10:19409242..19411294
RNA-Seq ExpressionPI0021885
SyntenyPI0021885
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034424.1 50S ribosomal protein L18 [Cucumis melo var. makuwa]1.9e-2172.97Show/hide
Query:  FVEKEDAEQNHNSVHTQTWRRKRFFSCYHKEAKSPPGRISTAPPDRASKVQNQIASTQPNHIQSGRKFARPIAW
        F +++  EQN N VHT+TWRRKR FSCYHKEAKSP GRI TAP D   +V+NQIAS QPNHIQSGRK ARPIAW
Subjt:  FVEKEDAEQNHNSVHTQTWRRKRFFSCYHKEAKSPPGRISTAPPDRASKVQNQIASTQPNHIQSGRKFARPIAW
KGN51926.1 hypothetical protein Csa_007733 [Cucumis sativus]1.0e-1974.29Show/hide
Query:  KEDAEQNHNSVHTQTWRRKRFFSCYHKEAKSPPGRISTAPPDRASKVQNQIASTQPNHIQSGRKFARPIA
        ++  EQN N V T+TWRRKR FSCYHKEAKSP GR+ST P DR  KV+NQIASTQPNHI SGRK ARPIA
Subjt:  KEDAEQNHNSVHTQTWRRKRFFSCYHKEAKSPPGRISTAPPDRASKVQNQIASTQPNHIQSGRKFARPIA
TrEMBL top hitse value%identityAlignment
A0A0A0KVZ6 Uncharacterized protein4.9e-2074.29Show/hide
Query:  KEDAEQNHNSVHTQTWRRKRFFSCYHKEAKSPPGRISTAPPDRASKVQNQIASTQPNHIQSGRKFARPIA
        ++  EQN N V T+TWRRKR FSCYHKEAKSP GR+ST P DR  KV+NQIASTQPNHI SGRK ARPIA
Subjt:  KEDAEQNHNSVHTQTWRRKRFFSCYHKEAKSPPGRISTAPPDRASKVQNQIASTQPNHIQSGRKFARPIA
A0A5A7ST92 50S ribosomal protein L189.0e-2272.97Show/hide
Query:  FVEKEDAEQNHNSVHTQTWRRKRFFSCYHKEAKSPPGRISTAPPDRASKVQNQIASTQPNHIQSGRKFARPIAW
        F +++  EQN N VHT+TWRRKR FSCYHKEAKSP GRI TAP D   +V+NQIAS QPNHIQSGRK ARPIAW
Subjt:  FVEKEDAEQNHNSVHTQTWRRKRFFSCYHKEAKSPPGRISTAPPDRASKVQNQIASTQPNHIQSGRKFARPIAW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAGGTGAAAAGGGAATCGGGAGAGGGATTTAAGAGGAGAGAAAAAACATCAATTAACTCATTAACTGAATTTGTCGAAAAGGAAGACGCTGAGCAAAATCACAA
TTCCGTCCACACACAAACGTGGAGGAGGAAACGTTTTTTCTCCTGCTATCACAAGGAGGCCAAGTCGCCGCCCGGGAGAATTTCAACGGCACCGCCTGATCGGGCTTCTA
AAGTACAGAATCAAATAGCTTCCACACAACCAAACCACATTCAATCCGGCAGAAAATTTGCTAGGCCAATAGCTTGGTGCTCGACGAAAGTCCTGAATGACGAAAACCCC
GTCGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAGGTGAAAAGGGAATCGGGAGAGGGATTTAAGAGGAGAGAAAAAACATCAATTAACTCATTAACTGAATTTGTCGAAAAGGAAGACGCTGAGCAAAATCACAA
TTCCGTCCACACACAAACGTGGAGGAGGAAACGTTTTTTCTCCTGCTATCACAAGGAGGCCAAGTCGCCGCCCGGGAGAATTTCAACGGCACCGCCTGATCGGGCTTCTA
AAGTACAGAATCAAATAGCTTCCACACAACCAAACCACATTCAATCCGGCAGAAAATTTGCTAGGCCAATAGCTTGGTGCTCGACGAAAGTCCTGAATGACGAAAACCCC
GTCGTATAA
Protein sequenceShow/hide protein sequence
MNEVKRESGEGFKRREKTSINSLTEFVEKEDAEQNHNSVHTQTWRRKRFFSCYHKEAKSPPGRISTAPPDRASKVQNQIASTQPNHIQSGRKFARPIAWCSTKVLNDENP
VV