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PI0021887 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021887
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:9951527..9952296
RNA-Seq ExpressionPI0021887
SyntenyPI0021887
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043337.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-4748.53Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        M++S++AP+H+W KE E  L+EC MELVS  GWKSDNGTF P YLAQL RMM EK+P C ++ +T+ID  IK++K+ FQAI E+ G +CSGF WNDE KC
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWVK-------------------RFEGFPADYGNDTEISMIYSQEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMD
        I+ E ELFDNWV+                    ++ F    GN+ +   +YSQ +D+S DD+  +RP  +SE RT S+ SK KRG Q    +E I  A+D
Subjt:  IITENELFDNWVK-------------------RFEGFPADYGNDTEISMIYSQEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMD

Query:  FAND
          ND
Subjt:  FAND

KAA0068155.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-5051.72Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        M++S++AP+H+WT+E E  L+ECLMELVS  GWKSDNGTFCP YLAQL RMM EK+P C ++ +T+ID  IK++K+ FQAI EM G SCSGF WNDE KC
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWV---KRFEGFPADYGN---------------DTEISMIYSQEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMDF
        I+ + ELFDNWV   +RF    AD G+               + +   +YSQ VD+S DD+  +RP  +SE RT S+ SK KRG Q    VE I  A+D 
Subjt:  IITENELFDNWV---KRFEGFPADYGN---------------DTEISMIYSQEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMDF

Query:  AND
         N+
Subjt:  AND

TYK11986.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-4850.98Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        M++S+ AP+H+W KE E  L+ECLMELVS  GWKSDNGTFCP YLAQL RMM EK+PGC ++ +T+ID  IK++K+ FQAI EM G +CSGF WNDE KC
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWV------KRFEGFPADY--------GNDTEISMIYS-----QEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMD
        I+ E ELFDNWV      KR    P  Y        G D             +E+D+S DD+  +RP  +SE RT S+ SK KRG Q    VE I  A+D
Subjt:  IITENELFDNWV------KRFEGFPADY--------GNDTEISMIYS-----QEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMD

Query:  FAND
          N+
Subjt:  FAND

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.3e-4747.19Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        MAS S+APKH WTKE E   +ECL+ELVS+ GW+SDNGTF P YLAQLQRMM EK+PG NIQ S+ ID  +KS+KK + AI EM G SCSGF WN+E +C
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWVK-------------------------------RFEGFP------ADYGNDT---------EISMIYSQEVDMSFDDIIGTRPDCSSES
        II E +LFD+W+K                               R E FP      ++  NDT         +I  +YSQ V MS D++ G R   +SE 
Subjt:  IITENELFDNWVK-------------------------------RFEGFP------ADYGNDT---------EISMIYSQEVDMSFDDIIGTRPDCSSES

Query:  RTSSNRSKTKRGGQTVETVEIIRNAMDFAND
        R  S+ SK KRG +  ETVE+IR+ M+F N+
Subjt:  RTSSNRSKTKRGGQTVETVEIIRNAMDFAND

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]3.0e-4846.52Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        M SSS+APKH+WTKE E  L+EC+++LVS   WKSDNGTF P YLAQL RMMV K+PGCN+  +T+IDY IK++K+ +QAI EM G SCSGF WND+ KC
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWVKR---------------------------------------------FEGFPADYGNDTEISMIYSQEVDMSFDDIIGTRPDCSSESR
        II E E FDNWV+                                              FE FP    ND EI  + S   +MS DDI  TRP    +SR
Subjt:  IITENELFDNWVKR---------------------------------------------FEGFPADYGNDTEISMIYSQEVDMSFDDIIGTRPDCSSESR

Query:  TSSNRSKTKRGGQTVETVEIIRNAMDFAND
        T+S+ SK +RGGQT +T ++I++AM    D
Subjt:  TSSNRSKTKRGGQTVETVEIIRNAMDFAND

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.1e-4747.19Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        MAS S+APKH WTKE E   +ECL+ELVS+ GW+SDNGTF P YLAQLQRMM EK+PG NIQ S+ ID  +KS+KK + AI EM G SCSGF WN+E +C
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWVK-------------------------------RFEGFP------ADYGNDT---------EISMIYSQEVDMSFDDIIGTRPDCSSES
        II E +LFD+W+K                               R E FP      ++  NDT         +I  +YSQ V MS D++ G R   +SE 
Subjt:  IITENELFDNWVK-------------------------------RFEGFP------ADYGNDT---------EISMIYSQEVDMSFDDIIGTRPDCSSES

Query:  RTSSNRSKTKRGGQTVETVEIIRNAMDFAND
        R  S+ SK KRG +  ETVE+IR+ M+F N+
Subjt:  RTSSNRSKTKRGGQTVETVEIIRNAMDFAND

A0A5A7U0H7 Retrotransposon protein2.1e-4747.19Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        MAS S+APKH WTKE E   +ECL+ELVS+ GW+SDNGTF P YLAQLQRMM EK+PG NIQ S+ ID  +KS+KK + AI EM G SCSGF WN+E +C
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWVK-------------------------------RFEGFP------ADYGNDT---------EISMIYSQEVDMSFDDIIGTRPDCSSES
        II E +LFD+W+K                               R E FP      ++  NDT         +I  +YSQ V MS D++ G R   +SE 
Subjt:  IITENELFDNWVK-------------------------------RFEGFP------ADYGNDT---------EISMIYSQEVDMSFDDIIGTRPDCSSES

Query:  RTSSNRSKTKRGGQTVETVEIIRNAMDFAND
        R  S+ SK KRG +  ETVE+IR+ M+F N+
Subjt:  RTSSNRSKTKRGGQTVETVEIIRNAMDFAND

A0A5A7VR00 Retrotransposon protein2.0e-5051.72Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        M++S++AP+H+WT+E E  L+ECLMELVS  GWKSDNGTFCP YLAQL RMM EK+P C ++ +T+ID  IK++K+ FQAI EM G SCSGF WNDE KC
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWV---KRFEGFPADYGN---------------DTEISMIYSQEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMDF
        I+ + ELFDNWV   +RF    AD G+               + +   +YSQ VD+S DD+  +RP  +SE RT S+ SK KRG Q    VE I  A+D 
Subjt:  IITENELFDNWV---KRFEGFPADYGN---------------DTEISMIYSQEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMDF

Query:  AND
         N+
Subjt:  AND

A0A5D3BT72 Retrotransposon protein1.6e-4748.53Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        M++S++AP+H+W KE E  L+EC MELVS  GWKSDNGTF P YLAQL RMM EK+P C ++ +T+ID  IK++K+ FQAI E+ G +CSGF WNDE KC
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWVK-------------------RFEGFPADYGNDTEISMIYSQEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMD
        I+ E ELFDNWV+                    ++ F    GN+ +   +YSQ +D+S DD+  +RP  +SE RT S+ SK KRG Q    +E I  A+D
Subjt:  IITENELFDNWVK-------------------RFEGFPADYGNDTEISMIYSQEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMD

Query:  FAND
          ND
Subjt:  FAND

A0A5D3CNH8 Retrotransposon protein1.1e-4850.98Show/hide
Query:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC
        M++S+ AP+H+W KE E  L+ECLMELVS  GWKSDNGTFCP YLAQL RMM EK+PGC ++ +T+ID  IK++K+ FQAI EM G +CSGF WNDE KC
Subjt:  MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKC

Query:  IITENELFDNWV------KRFEGFPADY--------GNDTEISMIYS-----QEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMD
        I+ E ELFDNWV      KR    P  Y        G D             +E+D+S DD+  +RP  +SE RT S+ SK KRG Q    VE I  A+D
Subjt:  IITENELFDNWV------KRFEGFPADY--------GNDTEISMIYS-----QEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMD

Query:  FAND
          N+
Subjt:  FAND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGTTCCTCTCAGGCCCCCAAACACATCTGGACGAAAGAGGTAGAGTTGTACCTTATCGAGTGCTTGATGGAGTTGGTCTCCACCAACGGCTGGAAATCAGATAA
CGGTACATTCTGTCCTAGGTACCTGGCTCAGCTACAAAGAATGATGGTAGAGAAGATGCCAGGATGTAACATCCAGGGTTCGACAATAATAGACTATTGGATCAAAAGCA
TGAAGAAAGTGTTCCAGGCCATCGTAGAAATGTGCGGGTCGTCATGTAGTGGGTTCGATTGGAACGATGAAGTGAAGTGCATCATCACTGAAAATGAGTTGTTCGACAAT
TGGGTGAAGAGGTTCGAGGGATTTCCTGCTGATTATGGGAACGATACAGAGATCTCTATGATATACAGTCAGGAAGTAGACATGTCGTTTGATGACATCATAGGCACACG
ACCTGATTGCTCAAGTGAGAGTAGAACTAGTTCAAACAGATCGAAGACAAAGCGGGGAGGCCAGACGGTAGAGACTGTGGAAATCATTCGCAATGCAATGGACTTCGCTA
ATGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGTTCCTCTCAGGCCCCCAAACACATCTGGACGAAAGAGGTAGAGTTGTACCTTATCGAGTGCTTGATGGAGTTGGTCTCCACCAACGGCTGGAAATCAGATAA
CGGTACATTCTGTCCTAGGTACCTGGCTCAGCTACAAAGAATGATGGTAGAGAAGATGCCAGGATGTAACATCCAGGGTTCGACAATAATAGACTATTGGATCAAAAGCA
TGAAGAAAGTGTTCCAGGCCATCGTAGAAATGTGCGGGTCGTCATGTAGTGGGTTCGATTGGAACGATGAAGTGAAGTGCATCATCACTGAAAATGAGTTGTTCGACAAT
TGGGTGAAGAGGTTCGAGGGATTTCCTGCTGATTATGGGAACGATACAGAGATCTCTATGATATACAGTCAGGAAGTAGACATGTCGTTTGATGACATCATAGGCACACG
ACCTGATTGCTCAAGTGAGAGTAGAACTAGTTCAAACAGATCGAAGACAAAGCGGGGAGGCCAGACGGTAGAGACTGTGGAAATCATTCGCAATGCAATGGACTTCGCTA
ATGACTAG
Protein sequenceShow/hide protein sequence
MASSSQAPKHIWTKEVELYLIECLMELVSTNGWKSDNGTFCPRYLAQLQRMMVEKMPGCNIQGSTIIDYWIKSMKKVFQAIVEMCGSSCSGFDWNDEVKCIITENELFDN
WVKRFEGFPADYGNDTEISMIYSQEVDMSFDDIIGTRPDCSSESRTSSNRSKTKRGGQTVETVEIIRNAMDFAND