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PI0021902 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021902
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr09:7190626..7191824
RNA-Seq ExpressionPI0021902
SyntenyPI0021902
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036574.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.1e-7881.48Show/hide
Query:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG
        +EYLATLQPIWTQLDQAKISPDHIRLIKV +GLR EYE VRAALLHRNPLPSL+AA+QEILFEEKRL IVSSL SDVALA+TH R ANE+ FCKNCKL G
Subjt:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG

Query:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG
        HKFANCPTIECRYCHKRGHIL+N PT PPRPPG S+KPKFS K GS SVVAAAT SDIT P + QL+DLHDLLK VI S STAL  T G
Subjt:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG

KAA0043149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-7882.01Show/hide
Query:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG
        +EYLATLQPIWTQLDQAKISPDHIRLIKV +GLR EYESVRAALLHRNPLPSL+AA+QEILFEEKRL IVSSL SDVALA+TH R ANE+ FCKNCKL G
Subjt:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG

Query:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG
        HKFANCPTIECRYCHKRGHIL+N PT PPRPPG S+KPKFS K GS SVVAAAT SDIT P + QL+DLHDLLK VI S STAL  T G
Subjt:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG

KAA0065380.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-7882.01Show/hide
Query:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG
        +EYLATLQPIWTQLDQAKISPDHIRLIKV +GLR EYESVRAALLHRNPLPSL+AA+QEILFEEKRL IVSSL SDVALA+TH R ANE+ FCKNCKL G
Subjt:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG

Query:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG
        HKFANCPTIECRYCHKRGHIL+N PT PPRPPG S+KPKFS K GS SVVAAAT SDIT P + QL+DLHDLLK VI S STAL  T G
Subjt:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG

XP_008445037.1 PREDICTED: uncharacterized protein LOC103488200 [Cucumis melo]1.2e-8080.51Show/hide
Query:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG
        +EYLATLQPIWTQL+QAKISPDHIRLIKV +GLR EYESVRAALLHRNPLPSL+AA+QEILFEEKRL IVSSL SDVALA+TH R ANE+ FCKNCKL G
Subjt:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG

Query:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLGLGSIDG
        HKFANCPTIECRYCHKRGHIL+N PT PPRPPG S+KPKFS K GS SVVAAAT SDIT P + QL+DLHDLLK VI S STAL  T G G  DG
Subjt:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLGLGSIDG

XP_031739694.1 uncharacterized protein LOC105434738 [Cucumis sativus]3.9e-8478.54Show/hide
Query:  MTYRGRKICDEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANEST
        +   G +  +EYLATLQPIWTQLDQAKI+P+HIRLIKV +GLR EYESVRAALLHRNPLPSL+AAIQEILFEE RL IVSSLPSDVALA+TH R ANES 
Subjt:  MTYRGRKICDEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANEST

Query:  FCKNCKLLGHKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLGLG
        FCKNCKL GHKFANCPTIECRYCHKRGHIL+N PT PPRPPG  YKPK S K  SP +VAAATPSDITTP NFQL+DLHDLLK VI SNSTAL  T G G
Subjt:  FCKNCKLLGHKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLGLG

Query:  SIDGA
          +GA
Subjt:  SIDGA

TrEMBL top hitse value%identityAlignment
A0A1S3BBA1 uncharacterized protein LOC1034882005.6e-8180.51Show/hide
Query:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG
        +EYLATLQPIWTQL+QAKISPDHIRLIKV +GLR EYESVRAALLHRNPLPSL+AA+QEILFEEKRL IVSSL SDVALA+TH R ANE+ FCKNCKL G
Subjt:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG

Query:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLGLGSIDG
        HKFANCPTIECRYCHKRGHIL+N PT PPRPPG S+KPKFS K GS SVVAAAT SDIT P + QL+DLHDLLK VI S STAL  T G G  DG
Subjt:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLGLGSIDG

A0A5A7SZ66 Retrovirus-related Pol polyprotein from transposon TNT 1-942.0e-7881.48Show/hide
Query:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG
        +EYLATLQPIWTQLDQAKISPDHIRLIKV +GLR EYE VRAALLHRNPLPSL+AA+QEILFEEKRL IVSSL SDVALA+TH R ANE+ FCKNCKL G
Subjt:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG

Query:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG
        HKFANCPTIECRYCHKRGHIL+N PT PPRPPG S+KPKFS K GS SVVAAAT SDIT P + QL+DLHDLLK VI S STAL  T G
Subjt:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG

A0A5A7TXR0 Putative mitochondrial protein3.4e-7879.37Show/hide
Query:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG
        +EYL T QPIWTQLDQAKISPDHIRLIKV +GLR EYESVRAALLHRNPLPSL+AA+QEILFEEKRL IVSSLPSDVALA+TH R ANE++FCKNCKL G
Subjt:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG

Query:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG
        HKFANCPTIECRYC+KRGHIL+N PT PPRPP  S+K KFS K+GS SVVAAAT SDIT P + QL+DLHDLLK V+ S STAL  T G
Subjt:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG

A0A5A7VDW0 Retrovirus-related Pol polyprotein from transposon TNT 1-945.3e-7982.01Show/hide
Query:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG
        +EYLATLQPIWTQLDQAKISPDHIRLIKV +GLR EYESVRAALLHRNPLPSL+AA+QEILFEEKRL IVSSL SDVALA+TH R ANE+ FCKNCKL G
Subjt:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG

Query:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG
        HKFANCPTIECRYCHKRGHIL+N PT PPRPPG S+KPKFS K GS SVVAAAT SDIT P + QL+DLHDLLK VI S STAL  T G
Subjt:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG

A0A5D3DG18 Retrovirus-related Pol polyprotein from transposon TNT 1-945.3e-7982.01Show/hide
Query:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG
        +EYLATLQPIWTQLDQAKISPDHIRLIKV +GLR EYESVRAALLHRNPLPSL+AA+QEILFEEKRL IVSSL SDVALA+TH R ANE+ FCKNCKL G
Subjt:  DEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLG

Query:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG
        HKFANCPTIECRYCHKRGHIL+N PT PPRPPG S+KPKFS K GS SVVAAAT SDIT P + QL+DLHDLLK VI S STAL  T G
Subjt:  HKFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTACAGAGGTCGGAAAATCTGTGATGAATATCTTGCTACTCTTCAGCCTATTTGGACTCAGTTAGACCAGGCAAAAATCAGCCCTGACCATATTCGCCTCATCAA
AGTCTTTGTGGGACTCCGTCTAGAGTATGAATCAGTTCGTGCTGCTCTGTTACATCGCAACCCTTTGCCATCTCTTAACGCCGCCATTCAGGAGATTTTATTTGAGGAGA
AAAGACTTAGCATTGTCTCCTCTCTGCCCTCTGATGTTGCTCTTGCCAGCACTCATCCTCGACTTGCTAATGAGTCCACTTTCTGCAAAAATTGTAAACTTCTTGGTCAT
AAGTTTGCTAATTGTCCTACCATTGAGTGCAGGTATTGTCACAAGCGAGGTCACATCTTGGAAAACTATCCGACTCATCCACCTCGTCCTCCTGGTCAATCATATAAACC
CAAGTTTTCGCCTAAAATGGGTTCCCCATCTGTTGTTGCAGCTGCCACTCCATCTGATATCACGACACCTCCGAACTTTCAGTTAAGTGATCTTCATGACTTACTGAAAC
ATGTGATATTTTCCAACTCTACTGCTCTTGTTTTCACCTTAGGTTTAGGATCCATAGACGGAGCAGTGATTGGTACGAGACTGAAGGTGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACGTACAGAGGTCGGAAAATCTGTGATGAATATCTTGCTACTCTTCAGCCTATTTGGACTCAGTTAGACCAGGCAAAAATCAGCCCTGACCATATTCGCCTCATCAA
AGTCTTTGTGGGACTCCGTCTAGAGTATGAATCAGTTCGTGCTGCTCTGTTACATCGCAACCCTTTGCCATCTCTTAACGCCGCCATTCAGGAGATTTTATTTGAGGAGA
AAAGACTTAGCATTGTCTCCTCTCTGCCCTCTGATGTTGCTCTTGCCAGCACTCATCCTCGACTTGCTAATGAGTCCACTTTCTGCAAAAATTGTAAACTTCTTGGTCAT
AAGTTTGCTAATTGTCCTACCATTGAGTGCAGGTATTGTCACAAGCGAGGTCACATCTTGGAAAACTATCCGACTCATCCACCTCGTCCTCCTGGTCAATCATATAAACC
CAAGTTTTCGCCTAAAATGGGTTCCCCATCTGTTGTTGCAGCTGCCACTCCATCTGATATCACGACACCTCCGAACTTTCAGTTAAGTGATCTTCATGACTTACTGAAAC
ATGTGATATTTTCCAACTCTACTGCTCTTGTTTTCACCTTAGGTTTAGGATCCATAGACGGAGCAGTGATTGGTACGAGACTGAAGGTGGGATGA
Protein sequenceShow/hide protein sequence
MTYRGRKICDEYLATLQPIWTQLDQAKISPDHIRLIKVFVGLRLEYESVRAALLHRNPLPSLNAAIQEILFEEKRLSIVSSLPSDVALASTHPRLANESTFCKNCKLLGH
KFANCPTIECRYCHKRGHILENYPTHPPRPPGQSYKPKFSPKMGSPSVVAAATPSDITTPPNFQLSDLHDLLKHVIFSNSTALVFTLGLGSIDGAVIGTRLKVG