; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0021908 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021908
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:9204244..9204450
RNA-Seq ExpressionPI0021908
SyntenyPI0021908
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036810.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]1.6e-1272.73Show/hide
Query:  MSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        MSP++IMGT+PGCS E +T S+ LKRK GGQA+E  EIIRNA EYANDQLK IAE
Subjt:  MSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

KAA0056167.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-1365.67Show/hide
Query:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        +EIPSMYSQGLDMS DDIMGTRP  + + R  SSR KRK  GQ +ETV+II N+IEY NDQL  I +
Subjt:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

KAA0060365.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1374.58Show/hide
Query:  QGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        QGLDM PDDIMGTRP  S E RTGSS  KRK GGQ +E+VEIIR+A+EY N QLKAIAE
Subjt:  QGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]4.9e-1771.64Show/hide
Query:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        MEIP MYSQG+DM  DDIMGTRP  S E RTGSS  KRK GGQA+ET+EIIRN +E++ND+LKAI E
Subjt:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

TYK11924.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-1468.66Show/hide
Query:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        MEIP+MYS+GLDMS   I GTR G + E R G S  K+K GGQ++ETVEIIRN +EYANDQLKAIAE
Subjt:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

TrEMBL top hitse value%identityAlignment
A0A5A7T0C2 RING-H2 finger protein ATL667.9e-1372.73Show/hide
Query:  MSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        MSP++IMGT+PGCS E +T S+ LKRK GGQA+E  EIIRNA EYANDQLK IAE
Subjt:  MSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

A0A5A7UNI7 Retrotransposon protein9.4e-1465.67Show/hide
Query:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        +EIPSMYSQGLDMS DDIMGTRP  + + R  SSR KRK  GQ +ETV+II N+IEY NDQL  I +
Subjt:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

A0A5A7V3C0 Retrotransposon protein7.2e-1474.58Show/hide
Query:  QGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        QGLDM PDDIMGTRP  S E RTGSS  KRK GGQ +E+VEIIR+A+EY N QLKAIAE
Subjt:  QGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

A0A5A7V469 Retrotransposon protein2.4e-1771.64Show/hide
Query:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        MEIP MYSQG+DM  DDIMGTRP  S E RTGSS  KRK GGQA+ET+EIIRN +E++ND+LKAI E
Subjt:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

A0A5D3CL79 Retrotransposon protein6.5e-1568.66Show/hide
Query:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE
        MEIP+MYS+GLDMS   I GTR G + E R G S  K+K GGQ++ETVEIIRN +EYANDQLKAIAE
Subjt:  MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATCCCCTCTATGTACAGTCAAGGACTAGACATGTCGCCTGACGACATAATGGGTACACGACCTGGTTGCTCAGTTGAGAGTAGAACTGGTTCGAGCAGGTTGAA
GAGGAAGCATGGAGGCCAGGCGTTAGAAACAGTGGAAATCATTCGCAATGCGATAGAGTATGCGAATGACCAACTGAAGGCCATTGCAGAATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATCCCCTCTATGTACAGTCAAGGACTAGACATGTCGCCTGACGACATAATGGGTACACGACCTGGTTGCTCAGTTGAGAGTAGAACTGGTTCGAGCAGGTTGAA
GAGGAAGCATGGAGGCCAGGCGTTAGAAACAGTGGAAATCATTCGCAATGCGATAGAGTATGCGAATGACCAACTGAAGGCCATTGCAGAATGTTGA
Protein sequenceShow/hide protein sequence
MEIPSMYSQGLDMSPDDIMGTRPGCSVESRTGSSRLKRKHGGQALETVEIIRNAIEYANDQLKAIAEC