; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0021914 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021914
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:3881754..3882248
RNA-Seq ExpressionPI0021914
SyntenyPI0021914
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]4.6e-3752.47Show/hide
Query:  GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQ
        G RA++F D+GSN    Y+ F ADD ++ + L MYS GL+MSP+D+M T+  R SE R  SSGSKRKR G   ++ +I+R AM+Y N+QL  IAEW  LQ
Subjt:  GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQ

Query:  RQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS
        RQD   +R E+VRQL+ IPEL+  DR  LM+I+M NV+DMKAF EV + +K  YC++IL+++
Subjt:  RQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3753.7Show/hide
Query:  GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQ
        G RA++F DVGSN    Y+ F A+  ++ +   MYS+GL+MSP+++MGT+  R SEGR  SSGSK+KRGG T+++ +I+R A++Y N+QL  IAEW  LQ
Subjt:  GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQ

Query:  RQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS
        RQD   +R EVVRQL+ IPEL+  DR  LM+IL+ NVNDMKAF EV + +K  YC++ILE++
Subjt:  RQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-5671.07Show/hide
Query:  KTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDE
        +TF DVGSN    YEGF ADDGN++EI MMYSQG+DM  +DIMGT+PDRS+EGR GSSGSKRK+GGQ VETMEIIRN M+++ND+LKAI EWLN+QRQD 
Subjt:  KTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDE

Query:  RASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA
         A   EVVRQLQ IPELS +DR+  MQILMCNV+DMKAF ++L+ELKLDYCT+I +D+A
Subjt:  RASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA

KAA0065601.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-3556.79Show/hide
Query:  ARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQR
        A  +TFVDV SNV   YEGFPA+DGN+ EI M+Y                   SEGR  SS SKRK G QT ET++II NA++Y N QLKAIA+  N+QR
Subjt:  ARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQR

Query:  QDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA
        Q + ASRAEV+ QLQGIP+LST DR+ L+ I+M NV++M+AF EV +ELKLDYCT +LED+A
Subjt:  QDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA

TYK11924.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-3658.94Show/hide
Query:  MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNL
        MG R K FVDVGSNV   YEGF  D  N++EI  MYS+GLDMS   I GT+   ++E R G S SK+K+GGQ++ET+EIIRN M+YANDQLKAIAEW N+
Subjt:  MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNL

Query:  QRQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEEL
        Q QD   +R E VRQLQGI ELS  D+ H + +LM NVNDMKA  +V +++
Subjt:  QRQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEEL

TrEMBL top hitse value%identityAlignment
A0A5A7TYQ6 Retrotransposon protein2.2e-3752.47Show/hide
Query:  GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQ
        G RA++F D+GSN    Y+ F ADD ++ + L MYS GL+MSP+D+M T+  R SE R  SSGSKRKR G   ++ +I+R AM+Y N+QL  IAEW  LQ
Subjt:  GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQ

Query:  RQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS
        RQD   +R E+VRQL+ IPEL+  DR  LM+I+M NV+DMKAF EV + +K  YC++IL+++
Subjt:  RQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS

A0A5A7TZA5 Retrotransposon protein7.7e-3853.7Show/hide
Query:  GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQ
        G RA++F DVGSN    Y+ F A+  ++ +   MYS+GL+MSP+++MGT+  R SEGR  SSGSK+KRGG T+++ +I+R A++Y N+QL  IAEW  LQ
Subjt:  GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQ

Query:  RQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS
        RQD   +R EVVRQL+ IPEL+  DR  LM+IL+ NVNDMKAF EV + +K  YC++ILE++
Subjt:  RQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS

A0A5A7V469 Retrotransposon protein1.3e-5671.07Show/hide
Query:  KTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDE
        +TF DVGSN    YEGF ADDGN++EI MMYSQG+DM  +DIMGT+PDRS+EGR GSSGSKRK+GGQ VETMEIIRN M+++ND+LKAI EWLN+QRQD 
Subjt:  KTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDE

Query:  RASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA
         A   EVVRQLQ IPELS +DR+  MQILMCNV+DMKAF ++L+ELKLDYCT+I +D+A
Subjt:  RASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA

A0A5A7VIQ2 Retrotransposon protein7.2e-3656.79Show/hide
Query:  ARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQR
        A  +TFVDV SNV   YEGFPA+DGN+ EI M+Y                   SEGR  SS SKRK G QT ET++II NA++Y N QLKAIA+  N+QR
Subjt:  ARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQR

Query:  QDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA
        Q + ASRAEV+ QLQGIP+LST DR+ L+ I+M NV++M+AF EV +ELKLDYCT +LED+A
Subjt:  QDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA

A0A5D3CL79 Retrotransposon protein8.5e-3758.94Show/hide
Query:  MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNL
        MG R K FVDVGSNV   YEGF  D  N++EI  MYS+GLDMS   I GT+   ++E R G S SK+K+GGQ++ET+EIIRN M+YANDQLKAIAEW N+
Subjt:  MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNL

Query:  QRQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEEL
        Q QD   +R E VRQLQGI ELS  D+ H + +LM NVNDMKA  +V +++
Subjt:  QRQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCACGCGCGAAGACGTTCGTCGATGTGGGGTCGAATGTGCTTGGAAGGTACGAGGGATTTCCCGCTGACGATGGAAACAATATAGAGATCCTTATGATGTATAG
TCAGGGACTAGACATGTCGCCTAATGACATCATGGGCACACAACCTGATCGCTCAAGTGAGGGGAGGATTGGTTCAAGCGGATCCAAGAGAAAGCGGGGAGGCCAAACGG
TAGAAACTATGGAAATCATTCGCAATGCAATGGACTATGCAAATGACCAGCTGAAGGCCATTGCAGAGTGGTTGAATTTACAACGTCAAGATGAGCGTGCCTCCCGTGCA
GAAGTCGTTAGACAATTACAGGGAATCCCTGAACTGAGTACCCACGACAGGATGCACCTTATGCAGATACTGATGTGCAATGTCAATGATATGAAAGCATTTTTTGAGGT
ACTCGAGGAGCTTAAATTGGACTATTGCACAGTCATTCTCGAAGATAGCGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCACGCGCGAAGACGTTCGTCGATGTGGGGTCGAATGTGCTTGGAAGGTACGAGGGATTTCCCGCTGACGATGGAAACAATATAGAGATCCTTATGATGTATAG
TCAGGGACTAGACATGTCGCCTAATGACATCATGGGCACACAACCTGATCGCTCAAGTGAGGGGAGGATTGGTTCAAGCGGATCCAAGAGAAAGCGGGGAGGCCAAACGG
TAGAAACTATGGAAATCATTCGCAATGCAATGGACTATGCAAATGACCAGCTGAAGGCCATTGCAGAGTGGTTGAATTTACAACGTCAAGATGAGCGTGCCTCCCGTGCA
GAAGTCGTTAGACAATTACAGGGAATCCCTGAACTGAGTACCCACGACAGGATGCACCTTATGCAGATACTGATGTGCAATGTCAATGATATGAAAGCATTTTTTGAGGT
ACTCGAGGAGCTTAAATTGGACTATTGCACAGTCATTCTCGAAGATAGCGCTTGA
Protein sequenceShow/hide protein sequence
MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRA
EVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA