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PI0021932 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021932
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr06:7265288..7272548
RNA-Seq ExpressionPI0021932
SyntenyPI0021932
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033710.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.4e-1054.32Show/hide
Query:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        MTH LA ATL+SFS                                VCAAKGPRPRYPRVWKT+KRIGTISKAAKLVDC+K
Subjt:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

TYK23004.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.4e-1054.32Show/hide
Query:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        MTH LA ATL+SFS                                VCAAKGPRPRYPRVWKT+KRIGTISKAAKLVDC+K
Subjt:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

XP_004140747.2 pentatricopeptide repeat-containing protein At4g21190 [Cucumis sativus]2.9e-1156.79Show/hide
Query:  MTHSLALATLSSF--------------------------------SVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        MTHSLA ATLSSF                                 VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDC+K
Subjt:  MTHSLALATLSSF--------------------------------SVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

XP_008439301.1 PREDICTED: pentatricopeptide repeat-containing protein At4g21190 isoform X2 [Cucumis melo]1.4e-1054.32Show/hide
Query:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        MTH LA ATL+SFS                                VCAAKGPRPRYPRVWKT+KRIGTISKAAKLVDC+K
Subjt:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

XP_023541679.1 pentatricopeptide repeat-containing protein At4g21190 [Cucurbita pepo subsp. pepo]6.5e-1183.72Show/hide
Query:  LATLSSFSVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        +A+ SS  VCAAKGPRPRYPRVWKT+KRIGTISKAAKLVDC+K
Subjt:  LATLSSFSVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

TrEMBL top hitse value%identityAlignment
A0A0A0L6Q9 Uncharacterized protein1.4e-1156.79Show/hide
Query:  MTHSLALATLSSF--------------------------------SVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        MTHSLA ATLSSF                                 VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDC+K
Subjt:  MTHSLALATLSSF--------------------------------SVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

A0A1S3AY30 pentatricopeptide repeat-containing protein At4g21190 isoform X27.0e-1154.32Show/hide
Query:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        MTH LA ATL+SFS                                VCAAKGPRPRYPRVWKT+KRIGTISKAAKLVDC+K
Subjt:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

A0A5A7SS06 Pentatricopeptide repeat-containing protein7.0e-1154.32Show/hide
Query:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        MTH LA ATL+SFS                                VCAAKGPRPRYPRVWKT+KRIGTISKAAKLVDC+K
Subjt:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

A0A5D3DHA7 Pentatricopeptide repeat-containing protein7.0e-1154.32Show/hide
Query:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        MTH LA ATL+SFS                                VCAAKGPRPRYPRVWKT+KRIGTISKAAKLVDC+K
Subjt:  MTHSLALATLSSFS--------------------------------VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

A0A6J1HWS4 pentatricopeptide repeat-containing protein At4g211901.2e-1081.4Show/hide
Query:  LATLSSFSVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        +A+  S  VCAAKGPRPRYPRVWKT+KRIGTISKAAKLVDC+K
Subjt:  LATLSSFSVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

SwissProt top hitse value%identityAlignment
Q8LG95 Pentatricopeptide repeat-containing protein At4g211904.4e-1080Show/hide
Query:  VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        VCAA+GPRPR PRVWKT+KRIGTISKAAK++ C+K
Subjt:  VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK

Arabidopsis top hitse value%identityAlignment
AT4G21190.1 Pentatricopeptide repeat (PPR) superfamily protein3.1e-1180Show/hide
Query:  VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK
        VCAA+GPRPR PRVWKT+KRIGTISKAAK++ C+K
Subjt:  VCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACACTCTCTAGCCCTAGCAACGCTCTCGTCCTTCTCGGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATTGGGAC
TATATCCAAGGCAGCAAAGCTTGTTGATTGTTTAAAGTTCAATCTTTTTGGAAAGTTCTTTAGAGAATTGACGGACATGGTGGCTAGTTGGAAAAGGAGGAGAGCTAACA
TGAAATGGAAGAACCATAAAAAAGGAGCATTGGACTCATTGAGAAAGTGTTCCTTAGGTTTTGATTCTATAGCTAGTGTAGGGGTTGAAATCTTGGAGGCATGTTGGGAT
AAGGATTTAGGAATTCCTCTTTCTCAGAAGAATCTGAATCTATACCTATTAGGTGAAGAGACAAGGGTCTTCTTTGTTGGTAGTCTTGGTCTGGAAAATGATAAGAAACT
TCTCTGTTTTCAATCGTTTGAGGCCTTTGTTGAAAATCTTGAGGTTGTCCTTGATTGTTCCCATTTGCTTGGTTCATTGCAGGAACTTCTTGATTGTTTACCCAAGATGT
TTTGCTTGAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACACACTCTCTAGCCCTAGCAACGCTCTCGTCCTTCTCGGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTTTGGAAAACCAAAAAGAGGATTGGGAC
TATATCCAAGGCAGCAAAGCTTGTTGATTGTTTAAAGTTCAATCTTTTTGGAAAGTTCTTTAGAGAATTGACGGACATGGTGGCTAGTTGGAAAAGGAGGAGAGCTAACA
TGAAATGGAAGAACCATAAAAAAGGAGCATTGGACTCATTGAGAAAGTGTTCCTTAGGTTTTGATTCTATAGCTAGTGTAGGGGTTGAAATCTTGGAGGCATGTTGGGAT
AAGGATTTAGGAATTCCTCTTTCTCAGAAGAATCTGAATCTATACCTATTAGGTGAAGAGACAAGGGTCTTCTTTGTTGGTAGTCTTGGTCTGGAAAATGATAAGAAACT
TCTCTGTTTTCAATCGTTTGAGGCCTTTGTTGAAAATCTTGAGGTTGTCCTTGATTGTTCCCATTTGCTTGGTTCATTGCAGGAACTTCTTGATTGTTTACCCAAGATGT
TTTGCTTGAATTAA
Protein sequenceShow/hide protein sequence
MTHSLALATLSSFSVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCLKFNLFGKFFRELTDMVASWKRRRANMKWKNHKKGALDSLRKCSLGFDSIASVGVEILEACWD
KDLGIPLSQKNLNLYLLGEETRVFFVGSLGLENDKKLLCFQSFEAFVENLEVVLDCSHLLGSLQELLDCLPKMFCLN