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PI0021964 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021964
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:2757958..2758338
RNA-Seq ExpressionPI0021964
SyntenyPI0021964
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]6.3e-4273.02Show/hide
Query:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK
        MPPP  P  VINHN++  EGDG DGLDDDQVTLL       RR  H VVR +GRGR  QNIQRRA +EA QF+RN+ AIKFK+SKFFGKTDPEEYIQW+K
Subjt:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK

Query:  EVENVFACHNFSDEQKVRFCVAKFKD
        EVENVFACHNF++EQKVRFCV KFKD
Subjt:  EVENVFACHNFSDEQKVRFCVAKFKD

KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]2.5e-3869.05Show/hide
Query:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK
        MPPP  P  +INHN++  EGDG D LDDDQVTLLG P    RR  HGVVR RGRGR  QNIQRRA +EA QF+ N+ AIKFK+ KFF KTDP+EYI+W+K
Subjt:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK

Query:  EVENVFACHNFSDEQKVRFCVAKFKD
        EVENVF CHNF+DEQKVRF V+K KD
Subjt:  EVENVFACHNFSDEQKVRFCVAKFKD

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]3.7e-4272.22Show/hide
Query:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK
        MPPP  PL  INHN + YEGDG D LDDDQVTLL  P    RR  HGVVR RG G+  QNIQRR  +E  Q +RN+ AIKFK+ KFFGKTDPEEYIQW+K
Subjt:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK

Query:  EVENVFACHNFSDEQKVRFCVAKFKD
        EVENVFACHNFS+EQKVRFCVAKFKD
Subjt:  EVENVFACHNFSDEQKVRFCVAKFKD

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]2.5e-3869.05Show/hide
Query:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK
        MPPP  P  +INHN++  EGDG D LDDDQVTLLG P    RR  HGVVR RGRGR  QNIQRRA +EA QF+ N+ AIKFK+ KFF KTDP+EYI+W+K
Subjt:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK

Query:  EVENVFACHNFSDEQKVRFCVAKFKD
        EVENVF CHNF+DEQKVRF V+K KD
Subjt:  EVENVFACHNFSDEQKVRFCVAKFKD

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]1.0e-3161.29Show/hide
Query:  PPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKKEV
        PPPP   V+  +ED YEGDG D  +DDQ T+L  PRG +     G+ RGRGRGRG  N Q RAPR   Q DRN+G IK K+ KF+GKTDPE YIQW KEV
Subjt:  PPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKKEV

Query:  ENVFACHNFSDEQKVRFCVAKFKD
        E VF CHNFS+E+KVR C+A+FKD
Subjt:  ENVFACHNFSDEQKVRFCVAKFKD

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein3.0e-4273.02Show/hide
Query:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK
        MPPP  P  VINHN++  EGDG DGLDDDQVTLL       RR  H VVR +GRGR  QNIQRRA +EA QF+RN+ AIKFK+SKFFGKTDPEEYIQW+K
Subjt:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK

Query:  EVENVFACHNFSDEQKVRFCVAKFKD
        EVENVFACHNF++EQKVRFCV KFKD
Subjt:  EVENVFACHNFSDEQKVRFCVAKFKD

A0A5A7TK52 Retrotrans_gag domain-containing protein1.2e-3869.05Show/hide
Query:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK
        MPPP  P  +INHN++  EGDG D LDDDQVTLLG P    RR  HGVVR RGRGR  QNIQRRA +EA QF+ N+ AIKFK+ KFF KTDP+EYI+W+K
Subjt:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK

Query:  EVENVFACHNFSDEQKVRFCVAKFKD
        EVENVF CHNF+DEQKVRF V+K KD
Subjt:  EVENVFACHNFSDEQKVRFCVAKFKD

A0A5A7TYI0 Uncharacterized protein1.8e-4272.22Show/hide
Query:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK
        MPPP  PL  INHN + YEGDG D LDDDQVTLL  P    RR  HGVVR RG G+  QNIQRR  +E  Q +RN+ AIKFK+ KFFGKTDPEEYIQW+K
Subjt:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK

Query:  EVENVFACHNFSDEQKVRFCVAKFKD
        EVENVFACHNFS+EQKVRFCVAKFKD
Subjt:  EVENVFACHNFSDEQKVRFCVAKFKD

A0A5D3CHG3 Retrotrans_gag domain-containing protein1.2e-3869.05Show/hide
Query:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK
        MPPP  P  +INHN++  EGDG D LDDDQVTLLG P    RR  HGVVR RGRGR  QNIQRRA +EA QF+ N+ AIKFK+ KFF KTDP+EYI+W+K
Subjt:  MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKK

Query:  EVENVFACHNFSDEQKVRFCVAKFKD
        EVENVF CHNF+DEQKVRF V+K KD
Subjt:  EVENVFACHNFSDEQKVRFCVAKFKD

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241154.9e-3261.29Show/hide
Query:  PPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKKEV
        PPPP   V+  +ED YEGDG D  +DDQ T+L  PRG +     G+ RGRGRGRG  N Q RAPR   Q DRN+G IK K+ KF+GKTDPE YIQW KEV
Subjt:  PPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKKEV

Query:  ENVFACHNFSDEQKVRFCVAKFKD
        E VF CHNFS+E+KVR C+A+FKD
Subjt:  ENVFACHNFSDEQKVRFCVAKFKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCTCCTCCACCACCACTTGCGGTAATTAACCATAATGAGGACCCATATGAGGGTGATGGTTTTGATGGTTTGGATGATGACCAAGTTACATTACTTGGGGCGCC
AAGAGGAGTCGAAAGACGTGGGAGTCATGGAGTAGTTAGAGGAAGAGGTCGAGGGAGAGGAAATCAAAACATCCAAAGGAGAGCTCCACGAGAAGCAATTCAATTTGATC
GTAATGTGGGGGCCATCAAATTTAAAGTCTCAAAGTTCTTTGGCAAAACCGATCCCGAGGAGTACATCCAATGGAAAAAAGAGGTGGAGAATGTTTTTGCTTGCCATAAT
TTTAGCGACGAACAAAAGGTTAGATTTTGTGTTGCCAAATTTAAAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCTCCTCCACCACCACTTGCGGTAATTAACCATAATGAGGACCCATATGAGGGTGATGGTTTTGATGGTTTGGATGATGACCAAGTTACATTACTTGGGGCGCC
AAGAGGAGTCGAAAGACGTGGGAGTCATGGAGTAGTTAGAGGAAGAGGTCGAGGGAGAGGAAATCAAAACATCCAAAGGAGAGCTCCACGAGAAGCAATTCAATTTGATC
GTAATGTGGGGGCCATCAAATTTAAAGTCTCAAAGTTCTTTGGCAAAACCGATCCCGAGGAGTACATCCAATGGAAAAAAGAGGTGGAGAATGTTTTTGCTTGCCATAAT
TTTAGCGACGAACAAAAGGTTAGATTTTGTGTTGCCAAATTTAAAGATTAA
Protein sequenceShow/hide protein sequence
MPPPPPPLAVINHNEDPYEGDGFDGLDDDQVTLLGAPRGVERRGSHGVVRGRGRGRGNQNIQRRAPREAIQFDRNVGAIKFKVSKFFGKTDPEEYIQWKKEVENVFACHN
FSDEQKVRFCVAKFKD