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PI0021997 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0021997
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationchr05:18626927..18628034
RNA-Seq ExpressionPI0021997
SyntenyPI0021997
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038951.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]8.5e-4650.45Show/hide
Query:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------
        + PQ  HAN+HLL G+A GSRW++QFCVTR  T+VVSQ+RYMFDLLQRD                                                   
Subjt:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------

Query:  ----------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTG
                              RSNN RLRDV DD QQV +ICNNN+RYMEEIH MYD+ IVPPPVHRGRVRV+E ELDEV YHNVEEVP  TQTQ+QTG
Subjt:  ----------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTG

Query:  YSS--SMMPGFGVGYCDSEVDTRY
        Y S  +MMP FG GY DSEV T Y
Subjt:  YSS--SMMPGFGVGYCDSEVDTRY

KAA0062642.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.4e-3274.51Show/hide
Query:  RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTGYSS--SMMPGFGVGYCDSEVDT
        RSNN RLRDV DDLQQ  DICNNNERYMEEIH MYD+ IVPPPVHRG VRV+E ELD+V YHNVEEVP  TQTQ+QTGY S  +MMP F  GYCD EV  
Subjt:  RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTGYSS--SMMPGFGVGYCDSEVDT

Query:  RY
         Y
Subjt:  RY

TYK01176.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]2.8e-3365.62Show/hide
Query:  MFDLLQRDH-----------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQ
        MFDLLQRD                  RSNN RLRDV DDLQQ  DICNNNERYMEEIH MYD+ IVPPPVHRG VRV+E ELD+V YHNVEEVP  TQTQ
Subjt:  MFDLLQRDH-----------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQ

Query:  NQTGYSS--SMMPGFGVGYCDSEVDTRY
        +QTGY S  +MMP F  GYCD EV   Y
Subjt:  NQTGYSS--SMMPGFGVGYCDSEVDTRY

TYK11193.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]5.0e-3847.32Show/hide
Query:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------
        + PQ  HAN+HLL G+A GS         R  T+VVSQ+RYMFDLLQRD                                                   
Subjt:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------

Query:  ----------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTG
                              RSNN RLRDV DD QQV +ICNNN+RYMEEIH MYD+ IVPPPVHRGRVRV+E ELDEV YHNVEEVP  TQTQ+QTG
Subjt:  ----------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTG

Query:  YSS--SMMPGFGVGYCDSEVDTRY
        Y S  +MMP FG GY DSEV T Y
Subjt:  YSS--SMMPGFGVGYCDSEVDTRY

TYK23842.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]8.8e-4344.98Show/hide
Query:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------
        + PQ  H NDHLL G+A GSRWR+QFCV RS TYVV+Q+RYMFDLLQRD                                                   
Subjt:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------

Query:  -----------------------------------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKE
                                                       RSNN RLRDVV+D QQV DICNNNERYME+IH +YD+ IVPPPVHR R RV+E
Subjt:  -----------------------------------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKE

Query:  VELDEVYYHNVEEVPLVTQTQNQTGYSS--SMMPGFGVGYCDSEVDTRY
         ELDEV YHNVEEVP  TQTQ+QTGY S  +MMP FG GYCDSEV   Y
Subjt:  VELDEVYYHNVEEVPLVTQTQNQTGYSS--SMMPGFGVGYCDSEVDTRY

TrEMBL top hitse value%identityAlignment
A0A5A7TBF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X14.1e-4650.45Show/hide
Query:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------
        + PQ  HAN+HLL G+A GSRW++QFCVTR  T+VVSQ+RYMFDLLQRD                                                   
Subjt:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------

Query:  ----------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTG
                              RSNN RLRDV DD QQV +ICNNN+RYMEEIH MYD+ IVPPPVHRGRVRV+E ELDEV YHNVEEVP  TQTQ+QTG
Subjt:  ----------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTG

Query:  YSS--SMMPGFGVGYCDSEVDTRY
        Y S  +MMP FG GY DSEV T Y
Subjt:  YSS--SMMPGFGVGYCDSEVDTRY

A0A5A7V342 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.6e-3274.51Show/hide
Query:  RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTGYSS--SMMPGFGVGYCDSEVDT
        RSNN RLRDV DDLQQ  DICNNNERYMEEIH MYD+ IVPPPVHRG VRV+E ELD+V YHNVEEVP  TQTQ+QTGY S  +MMP F  GYCD EV  
Subjt:  RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTGYSS--SMMPGFGVGYCDSEVDT

Query:  RY
         Y
Subjt:  RY

A0A5D3BSG8 GATA zinc finger domain-containing protein 10-like isoform X21.4e-3365.62Show/hide
Query:  MFDLLQRDH-----------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQ
        MFDLLQRD                  RSNN RLRDV DDLQQ  DICNNNERYMEEIH MYD+ IVPPPVHRG VRV+E ELD+V YHNVEEVP  TQTQ
Subjt:  MFDLLQRDH-----------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQ

Query:  NQTGYSS--SMMPGFGVGYCDSEVDTRY
        +QTGY S  +MMP F  GYCD EV   Y
Subjt:  NQTGYSS--SMMPGFGVGYCDSEVDTRY

A0A5D3CH23 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.4e-3847.32Show/hide
Query:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------
        + PQ  HAN+HLL G+A GS         R  T+VVSQ+RYMFDLLQRD                                                   
Subjt:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------

Query:  ----------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTG
                              RSNN RLRDV DD QQV +ICNNN+RYMEEIH MYD+ IVPPPVHRGRVRV+E ELDEV YHNVEEVP  TQTQ+QTG
Subjt:  ----------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVYYHNVEEVPLVTQTQNQTG

Query:  YSS--SMMPGFGVGYCDSEVDTRY
        Y S  +MMP FG GY DSEV T Y
Subjt:  YSS--SMMPGFGVGYCDSEVDTRY

A0A5D3DJV7 Serine/threonine-protein phosphatase 7 long form-like protein4.3e-4344.98Show/hide
Query:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------
        + PQ  H NDHLL G+A GSRWR+QFCV RS TYVV+Q+RYMFDLLQRD                                                   
Subjt:  MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDH--------------------------------------------------

Query:  -----------------------------------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKE
                                                       RSNN RLRDVV+D QQV DICNNNERYME+IH +YD+ IVPPPVHR R RV+E
Subjt:  -----------------------------------------------RSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKE

Query:  VELDEVYYHNVEEVPLVTQTQNQTGYSS--SMMPGFGVGYCDSEVDTRY
         ELDEV YHNVEEVP  TQTQ+QTGY S  +MMP FG GYCDSEV   Y
Subjt:  VELDEVYYHNVEEVPLVTQTQNQTGYSS--SMMPGFGVGYCDSEVDTRY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCCACAATTTAGACATGCAAACGATCATCTATTACTTGGACAAGCACACGGTTCACGATGGAGAAACCAATTTTGTGTAACCAGATCAACTACTTATGTAGTTAG
TCAGCATAGGTACATGTTTGACCTTCTTCAGCGTGATCATAGATCGAACAACAGAAGACTTCGTGATGTTGTAGATGATCTACAACAAGTCTTTGATATATGTAATAATA
ATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACTTATTGTACCTCCACCAGTTCACAGGGGACGTGTTCGAGTGAAAGAAGTTGAACTTGATGAAGTTTAT
TACCATAATGTAGAAGAAGTGCCTCTAGTGACACAAACACAGAACCAAACTGGTTATAGTAGTTCGATGATGCCAGGATTTGGAGTAGGATATTGTGATTCTGAGGTCGA
TACAAGATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCCACAATTTAGACATGCAAACGATCATCTATTACTTGGACAAGCACACGGTTCACGATGGAGAAACCAATTTTGTGTAACCAGATCAACTACTTATGTAGTTAG
TCAGCATAGGTACATGTTTGACCTTCTTCAGCGTGATCATAGATCGAACAACAGAAGACTTCGTGATGTTGTAGATGATCTACAACAAGTCTTTGATATATGTAATAATA
ATGAGAGGTACATGGAGGAGATACATTATATGTACGATGTACTTATTGTACCTCCACCAGTTCACAGGGGACGTGTTCGAGTGAAAGAAGTTGAACTTGATGAAGTTTAT
TACCATAATGTAGAAGAAGTGCCTCTAGTGACACAAACACAGAACCAAACTGGTTATAGTAGTTCGATGATGCCAGGATTTGGAGTAGGATATTGTGATTCTGAGGTCGA
TACAAGATATTAG
Protein sequenceShow/hide protein sequence
MTPQFRHANDHLLLGQAHGSRWRNQFCVTRSTTYVVSQHRYMFDLLQRDHRSNNRRLRDVVDDLQQVFDICNNNERYMEEIHYMYDVLIVPPPVHRGRVRVKEVELDEVY
YHNVEEVPLVTQTQNQTGYSSSMMPGFGVGYCDSEVDTRY