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PI0022011 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0022011
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr12:20888223..20892921
RNA-Seq ExpressionPI0022011
SyntenyPI0022011
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.6e-6071.17Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS
         EMKQ+++Q T AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP+++EK  +S   L +NS
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-6072.26Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS
         EMKQ+++Q T AISK++GKGKL AQ ++ANVSA+SLRSGK L+TP+++EK  +S
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-5970.55Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+GWRDNP LRWGNDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS
         EMKQ+++Q T AISK++GKGKLPAQP+HANVSAISLRSGK L+TP+++EK  +S   L +NS
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-6072.9Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS
         EMKQ+++Q T AISK++GKGKLPAQPDHANVSAISLRSGK L+TP+++EK   S
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]4.8e-6069.94Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG ++KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS
         +MKQ+++Q T  ISK++GKGKLPAQPDH NVSAISLRSGK L+TP+++EK  +S   L +NS
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032912.3e-6069.94Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG ++KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS
         +MKQ+++Q T  ISK++GKGKLPAQPDH NVSAISLRSGK L+TP+++EK  +S   L +NS
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS

A0A5A7VE49 Retrotransposon gag protein5.1e-6070.55Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+GWRDNP LRWGNDNQ+  QA S+S+NQGTNLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS
         EMKQ+++Q T AISK++GKGKLPAQP+HANVSAISLRSGK L+TP+++EK  +S   L +NS
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS

A0A5D3CFE7 Retrotransposon gag protein2.3e-6072.9Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQGTNLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS
         EMKQ+++Q T AISK++GKGKLPAQPDHANVSAISLRSGK L+TP+++EK   S
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS

A0A5D3CRR8 Retrotransposon gag protein2.3e-6072.26Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS
         EMKQ+++Q T AISK++GKGKL AQ ++ANVSA+SLRSGK L+TP+++EK  +S
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSS

E5GBZ4 Retrotransposon gag protein7.9e-6171.17Show/hide
Query:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQ

Query:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS
         EMKQ+++Q T AISK++GKGKLPAQPD+ANVSAISLRSGK L+TP+++EK  +S   L +NS
Subjt:  NEMKQKISQSTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACCTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATTGGACATCCAAATGACAAGTGCCCTGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAG
CAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGAAAATATCTCAATCA
ACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGACCACGCCAACGTAAGTGCCATCTCGCTTAGGAGCGGTAAGACTCTGGAAACCCCTTC
TAGCGAAGAAAAGTCCCCAAGCAGCCACCATTTTCTCTCCATAAATTCCTTTTCCGTCGCGCATTGCCTCGCCGTCCGGAAGCCTTCTCCGCCTGCCCGTACCGCTGGAA
AACCCTTGTCGCTTGCTTGGGTGATCTGGGTTTGTTCTTTCGCGAGGTGGAGTAGTGTGAGGCCTCTTCGTGGTCATCTCAGTGTTTGTTTGGTTTTTCCTCTATCTCTT
TGTTCACGGGAGGAAGTGTGTTCGCAAGCTGTGAAGATCGGGCCGCGAGCTGAAGTGTTAGTTCGAGAGCTTCCTTTGCCGCCAGCTGTGGTCTGCGTTCAGCCTCGCGT
CTCGCCAAGTCTCTGCCCGCCTCTTCTTTTCGCAAGTTCCCTTGGTAGCGAGGTAAGTCTTCATTGTTGCGGTTTGGTTTTGGTTCTCCGAATTCTTGAATCTAAGTCTT
TTCGCCTGGTGTTTGGTCTTGCCGCGCAGAGTGTGGTCTCGCCAAGGAGTAAGCGTTTGGAAGCTTGCCTTTCTCGCGATTCAGACCCTTCCTTACCGCATGGTGCACTT
GGACTTAACGCATCCGAGGTAAGGGGTTTCTCTACCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTACCTTACTAACCTCTTTTGTGCAAGGTGGATCTGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATTGGACATCCAAATGACAAGTGCCCTGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAACCAACGACCCGCACAAG
CAACTTCATCTTCAAACAATCAAGGTACTAATTTGGAAGACTTAGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAGAATGAAATGAAACAGAAAATATCTCAATCA
ACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTCAGCCTGACCACGCCAACGTAAGTGCCATCTCGCTTAGGAGCGGTAAGACTCTGGAAACCCCTTC
TAGCGAAGAAAAGTCCCCAAGCAGCCACCATTTTCTCTCCATAAATTCCTTTTCCGTCGCGCATTGCCTCGCCGTCCGGAAGCCTTCTCCGCCTGCCCGTACCGCTGGAA
AACCCTTGTCGCTTGCTTGGGTGATCTGGGTTTGTTCTTTCGCGAGGTGGAGTAGTGTGAGGCCTCTTCGTGGTCATCTCAGTGTTTGTTTGGTTTTTCCTCTATCTCTT
TGTTCACGGGAGGAAGTGTGTTCGCAAGCTGTGAAGATCGGGCCGCGAGCTGAAGTGTTAGTTCGAGAGCTTCCTTTGCCGCCAGCTGTGGTCTGCGTTCAGCCTCGCGT
CTCGCCAAGTCTCTGCCCGCCTCTTCTTTTCGCAAGTTCCCTTGGTAGCGAGGTAAGTCTTCATTGTTGCGGTTTGGTTTTGGTTCTCCGAATTCTTGAATCTAAGTCTT
TTCGCCTGGTGTTTGGTCTTGCCGCGCAGAGTGTGGTCTCGCCAAGGAGTAAGCGTTTGGAAGCTTGCCTTTCTCGCGATTCAGACCCTTCCTTACCGCATGGTGCACTT
GGACTTAACGCATCCGAGGTAAGGGGTTTCTCTACCATTTAG
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQGTNLEDLVKALATNTISFQNEMKQKISQS
TNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETPSSEEKSPSSHHFLSINSFSVAHCLAVRKPSPPARTAGKPLSLAWVIWVCSFARWSSVRPLRGHLSVCLVFPLSL
CSREEVCSQAVKIGPRAEVLVRELPLPPAVVCVQPRVSPSLCPPLLFASSLGSEVSLHCCGLVLVLRILESKSFRLVFGLAAQSVVSPRSKRLEACLSRDSDPSLPHGAL
GLNASEVRGFSTI